RNAprotDB

Contacts -

5L2L_A	5L2L_C	Distance	Hbond nuc:res	Base Stacking	Residue conservation
A:416 [LYS]	C:5 [A]	3.01	base:SC		77.7
A:417 [PHE]	C:4 [A]	3.4		base/AA stacks	66.3
A:417 [PHE]	C:5 [A]	3.5			66.3
A:420 [HIS]	C:4 [A]	3.67			48.6
A:421 [CYS]	C:4 [A]	3.52			98.6
A:422 [THR]	C:4 [A]	3.0	base:BB		78.4
A:423 [ASN]	C:4 [A]	3.56			77.2
A:456 [GLU]	C:5 [A]	2.94	base:SC		43.0
A:457 [ASP]	C:5 [A]	3.03	base:BB		22.4
A:458 [CYS]	C:5 [A]	3.51			95.1
A:459 [ARG]	C:5 [A]	2.93	base:BB	base/AA stacks	77.6
A:459 [ARG]	C:7 [A]	2.95			77.6
A:460 [PHE]	C:5 [A]	3.68			55.0
A:460 [PHE]	C:6 [A]	3.4		base/AA stacks	55.0
A:460 [PHE]	C:7 [A]	3.76			55.0
A:460 [PHE]	C:8 [A]	4.92			55.0
A:460 [PHE]	C:12 [G]	3.87			55.0
A:463 [ASN]	C:12 [G]	2.93			40.3
A:464 [CYS]	C:6 [A]	3.59			95.0
A:464 [CYS]	C:12 [G]	4.58			95.0
A:465 [LYS]	C:6 [A]	4.75			73.6
A:465 [LYS]	C:12 [G]	3.02			73.6
A:466 [ASN]	C:6 [A]	4.13			75.3
A:471 [PHE]	C:5 [A]	3.47		base/AA stacks	73.9

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

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