Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
View
Focus on
InterfaceRNA
Protein
All
Show chains
Interface
show interface as licoriceCommon contacts -
5L2L_A
|
5L2L_C
|
5L2L_B
|
5L2L_D
|
Conserved?
|
---|---|---|---|---|
A:416 [LYS] | C:5 [A] | B:416 [LYS] | D:5 [A] | ✔ |
A:422 [THR] | C:4 [A] | B:422 [THR] | D:4 [A] | ✔ |
A:471 [PHE] | C:5 [A] | B:471 [PHE] | D:5 [A] | ✔ |
A:421 [CYS] | C:4 [A] | B:421 [CYS] | D:4 [A] | ✔ |
A:459 [ARG] | C:5 [A] | B:459 [ARG] | D:5 [A] | ✔ |
A:459 [ARG] | C:7 [A] | B:459 [ARG] | D:7 [A] | ✔ |
A:457 [ASP] | C:5 [A] | B:457 [ASP] | D:5 [A] | ✔ |
A:464 [CYS] | C:6 [A] | B:464 [CYS] | D:6 [A] | ✔ |
A:460 [PHE] | C:5 [A] | B:460 [PHE] | D:5 [A] | ✔ |
A:460 [PHE] | C:6 [A] | B:460 [PHE] | D:6 [A] | ✔ |
A:460 [PHE] | C:7 [A] | B:460 [PHE] | D:7 [A] | ✔ |
A:460 [PHE] | C:8 [A] | B:460 [PHE] | D:8 [A] | ✔ |
A:460 [PHE] | C:12 [G] | B:460 [PHE] | D:12 [G] | ✔ |
A:417 [PHE] | C:4 [A] | B:417 [PHE] | D:4 [A] | ✔ |
A:417 [PHE] | C:5 [A] | B:417 [PHE] | D:5 [A] | ✔ |
A:456 [GLU] | C:5 [A] | B:456 [GLU] | D:5 [A] | ✔ |
A:420 [HIS] | C:4 [A] | B:420 [HIS] | D:4 [A] | ✔ |
A:423 [ASN] | C:4 [A] | B:423 [ASN] | D:4 [A] | ✔ |
A:466 [ASN] | C:6 [A] | B:466 [ASN] | D:6 [A] | ✔ |
A:463 [ASN] | C:12 [G] | B:463 [ASN] | D:12 [G] | ✔ |
A:465 [LYS] | C:12 [G] | B:465 [LYS] | D:12 [G] | ✔ |
A:458 [CYS] | C:5 [A] | B:458 [CYS] | D:5 [A] | ✔ |
A:464 [CYS] | C:12 [G] | B:464 [CYS] | D:12 [G] | ❌ 5L2L_B_D |
A:465 [LYS] | C:6 [A] | B:465 [LYS] | D:6 [A] | ❌ 5L2L_B_D |
A:459 [ARG] | C:4 [A] | B:459 [ARG] | D:4 [A] | ❌ 5L2L_A_C |
Properties of this pair
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
---|---|---|---|---|---|---|---|---|---|---|---|---|
CCCH zinc finger | 0.94 | 0.59 | 1.00 | 0.95 | 0.37 | 1.0 | 1.0 | 0.99 | 0.97 | 1.00 | 0.00 |
Other pairs involving 5L2L_A_C or 5L2L_B_D
Total number of entries: 1
Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
---|---|---|---|---|---|---|---|---|
5L2L_A_C | 5L2L_B_D | 0.99 | 0.94 | 0.59 | 1.0 | CCCH zinc finger | compare |