Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
View
Focus on
InterfaceRNA
Protein
All
Show chains
Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 5L2L_A
|
5L2L_D
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| A:419 [THR] | D:6 [A] | 2.93 | 50.5 | |||
| A:420 [HIS] | D:6 [A] | 4.1 | 48.6 | |||
| A:432 [ARG] | D:6 [A] | 3.57 | 40.0 | |||
| A:432 [ARG] | D:8 [A] | 3.06 | sugar:SC | base/AA stacks | 40.0 | |
| A:432 [ARG] | D:9 [A] | 3.01 | base:BB | 40.0 | ||
| A:432 [ARG] | D:10 [A] | 4.85 | 40.0 | |||
| A:433 [SER] | D:9 [A] | 3.81 | 62.3 | |||
| A:433 [SER] | D:12 [G] | 4.94 | 62.3 | |||
| A:434 [HIS] | D:12 [G] | 4.15 | 38.9 | |||
| A:435 [ILE] | D:11 [A] | 3.82 | 41.6 | |||
| A:435 [ILE] | D:12 [G] | 3.6 | 41.6 | |||
| A:436 [MET] | D:11 [A] | 3.92 | 39.3 | |||
| A:437 [CYS] | D:11 [A] | 3.5 | 95.1 | |||
| A:438 [ARG] | D:11 [A] | 3.01 | base:BB, sugar:SC | base/AA stacks | 68.3 | |
| A:445 [ARG] | D:10 [A] | 3.48 | base/AA stacks | 68.1 | ||
| A:447 [ASP] | D:10 [A] | 3.03 | base:BB | 51.9 | ||
| A:448 [CYS] | D:10 [A] | 3.36 | 95.9 | |||
| A:448 [CYS] | D:11 [A] | 4.77 | 95.9 | |||
| A:449 [LEU] | D:8 [A] | 4.83 | 46.8 | |||
| A:449 [LEU] | D:9 [A] | 3.75 | 46.8 | |||
| A:449 [LEU] | D:10 [A] | 3.2 | base:BB | 46.8 | ||
| A:450 [PHE] | D:9 [A] | 4.34 | 62.0 | |||
| A:450 [PHE] | D:10 [A] | 3.71 | 62.0 | |||
| A:450 [PHE] | D:11 [A] | 3.4 | base/AA stacks | 62.0 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group19 | 5L2L_A_D | A: Nab2p, Saccharomyces cerevisiae yjm1574 (genetically engineered) D: Saccharomyces cerevisiae (synthetic) | P32505 | CCCH zinc finger | ✘ |
|
Interologs
Total number of interologs for this interface: 1
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 5L2L_A_D | 5L2L_B_C | 0.96 | 0.93 | 0.49 | 1.0 | CCCH zinc finger | compare |