Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
View
Focus on
InterfaceRNA
Protein
All
Show chains
Interface
show interface as licoriceCommon contacts -
5L2L_A
|
5L2L_D
|
5L2L_B
|
5L2L_C
|
Conserved?
|
---|---|---|---|---|
A:450 [PHE] | D:9 [A] | B:450 [PHE] | C:9 [A] | ✔ |
A:450 [PHE] | D:10 [A] | B:450 [PHE] | C:10 [A] | ✔ |
A:450 [PHE] | D:11 [A] | B:450 [PHE] | C:11 [A] | ✔ |
A:448 [CYS] | D:10 [A] | B:448 [CYS] | C:10 [A] | ✔ |
A:448 [CYS] | D:11 [A] | B:448 [CYS] | C:11 [A] | ✔ |
A:438 [ARG] | D:11 [A] | B:438 [ARG] | C:11 [A] | ✔ |
A:433 [SER] | D:9 [A] | B:433 [SER] | C:9 [A] | ✔ |
A:432 [ARG] | D:6 [A] | B:432 [ARG] | C:6 [A] | ✔ |
A:432 [ARG] | D:8 [A] | B:432 [ARG] | C:8 [A] | ✔ |
A:432 [ARG] | D:9 [A] | B:432 [ARG] | C:9 [A] | ✔ |
A:432 [ARG] | D:10 [A] | B:432 [ARG] | C:10 [A] | ✔ |
A:445 [ARG] | D:10 [A] | B:445 [ARG] | C:10 [A] | ✔ |
A:437 [CYS] | D:11 [A] | B:437 [CYS] | C:11 [A] | ✔ |
A:435 [ILE] | D:11 [A] | B:435 [ILE] | C:11 [A] | ✔ |
A:435 [ILE] | D:12 [G] | B:435 [ILE] | C:12 [G] | ✔ |
A:420 [HIS] | D:6 [A] | B:420 [HIS] | C:6 [A] | ✔ |
A:449 [LEU] | D:8 [A] | B:449 [LEU] | C:8 [A] | ✔ |
A:449 [LEU] | D:9 [A] | B:449 [LEU] | C:9 [A] | ✔ |
A:449 [LEU] | D:10 [A] | B:449 [LEU] | C:10 [A] | ✔ |
A:436 [MET] | D:11 [A] | B:436 [MET] | C:11 [A] | ✔ |
A:419 [THR] | D:6 [A] | B:419 [THR] | C:6 [A] | ✔ |
A:447 [ASP] | D:10 [A] | B:447 [ASP] | C:10 [A] | ✔ |
A:433 [SER] | D:12 [G] | B:433 [SER] | C:12 [G] | ❌ 5L2L_B_C |
A:434 [HIS] | D:12 [G] | B:434 [HIS] | C:12 [G] | ❌ 5L2L_B_C |
A:434 [HIS] | D:6 [A] | B:434 [HIS] | C:6 [A] | ❌ 5L2L_A_D |
A:438 [ARG] | D:10 [A] | B:438 [ARG] | C:10 [A] | ❌ 5L2L_A_D |
A:420 [HIS] | D:5 [A] | B:420 [HIS] | C:5 [A] | ❌ 5L2L_D:5 no longer at interface |
A:439 [GLU] | D:11 [A] | B:439 [GLU] | C:11 [A] | ❌ 5L2L_A:439 no longer at interface |
Properties of this pair
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
---|---|---|---|---|---|---|---|---|---|---|---|---|
CCCH zinc finger | 0.93 | 0.49 | 1.00 | 0.95 | 0.37 | 1.0 | 1.0 | 0.96 | 0.98 | 1.00 | 0.33 |
Other pairs involving 5L2L_A_D or 5L2L_B_C
Total number of entries: 1
Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
---|---|---|---|---|---|---|---|---|
5L2L_A_D | 5L2L_B_C | 0.96 | 0.93 | 0.49 | 1.0 | CCCH zinc finger | compare |