RNAprotDB

Contacts -

1JBR_A	1JBR_C	Distance	Base Pair	Hbond nuc:res	Base Stacking	Residue conservation
A:41 [GLY]	C:10 [G]	5.0				63.05
A:41 [GLY]	C:11 [U]	4.46	F:20 [A]			63.05
A:43 [THR]	C:10 [G]	4.71				84.09
A:44 [GLY]	C:10 [G]	3.8				57.55
A:45 [SER]	C:10 [G]	4.01				92.6
A:46 [SER]	C:10 [G]	3.77				85.19
A:47 [TYR]	C:17 [A23]	3.34				83.1
A:49 [HIS]	C:17 [A23]	3.14				98.84
A:50 [TRP]	C:15 [A]	3.67				4.48
A:50 [TRP]	C:17 [A23]	3.43				4.48
A:51 [PHE]	C:17 [A23]	3.35			base/AA stacks	70.11
A:52 [THR]	C:15 [A]	3.39				15.68
A:52 [THR]	C:17 [A23]	2.44		base:SC, base:BB, base:SC		15.68
A:53 [ASN]	C:17 [A23]	3.34		base:BB		90.48
A:54 [GLY]	C:17 [A23]	3.83				7.68
A:55 [TYR]	C:15 [A]	4.43				57.7
A:62 [ILE]	C:16 [G]	4.59				3.2
A:65 [ARG]	C:15 [A]	4.57				5.67
A:65 [ARG]	C:16 [G]	2.46		base:SC		5.67
A:65 [ARG]	C:17 [A23]	2.68		base:SC		5.67
A:81 [HIS]	C:15 [A]	4.73				78.52
A:95 [GLU]	C:17 [A23]	3.69		sugar:SC		97.75
A:110 [LYS]	C:10 [G]	2.86				69.5
A:111 [LYS]	C:7 [U]	3.4	F:23 [C]			75.96
A:111 [LYS]	C:8 [C]	4.13	F:22 [C]			75.96
A:111 [LYS]	C:9 [A]	3.06	F:21 [A]			75.96
A:111 [LYS]	C:10 [G]	4.17				75.96
A:113 [LYS]	C:10 [G]	3.22				62.35
A:120 [ARG]	C:17 [A23]	4.46				99.0
A:136 [HIS]	C:17 [A23]	4.52				97.78
A:142 [GLY]	C:16 [G]	3.6				96.15
A:142 [GLY]	C:17 [A23]	4.65				96.15
A:143 [ASP]	C:16 [G]	2.53		base:SC, base:SC		37.27
A:144 [LEU]	C:16 [G]	4.98				88.12
A:144 [LEU]	C:17 [A23]	3.74				88.12

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

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