RNAprotDB

Contacts -

1JBS_A	1JBS_C	Distance	Base Pair	Hbond nuc:res	Residue conservation
A:40 [ASP]	C:11 [U]	4.98	C:20 [A]		43.74
A:41 [GLY]	C:11 [U]	3.78	C:20 [A]		63.05
A:42 [LYS]	C:10 [G]	4.35			51.67
A:42 [LYS]	C:11 [U]	2.68	C:20 [A]		51.67
A:42 [LYS]	C:12 [A]	3.55	C:19 [G]		51.67
A:43 [THR]	C:10 [G]	3.22			84.09
A:43 [THR]	C:11 [U]	4.55	C:20 [A]		84.09
A:44 [GLY]	C:10 [G]	3.25			57.55
A:45 [SER]	C:10 [G]	4.28			92.6
A:46 [SER]	C:10 [G]	3.38			85.19
A:46 [SER]	C:19 [G]	3.73	C:12 [A]		85.19
A:47 [TYR]	C:18 [G]	4.25	C:13 [C]		83.1
A:50 [TRP]	C:15 [A]	3.53			4.48
A:52 [THR]	C:15 [A]	3.6			15.68
A:55 [TYR]	C:15 [A]	4.39			57.7
A:62 [ILE]	C:15 [A]	3.36			3.2
A:62 [ILE]	C:16 [U]	4.51			3.2
A:65 [ARG]	C:15 [A]	4.5			5.67
A:65 [ARG]	C:16 [U]	2.62			5.67
A:81 [HIS]	C:15 [A]	4.35			78.52
A:83 [GLN]	C:13 [C]	4.13	C:18 [G]		37.58
A:110 [LYS]	C:8 [C]	4.86	C:22 [C]		69.5
A:110 [LYS]	C:9 [A]	2.85	C:21 [A]	base:SC, sugar:SC	69.5
A:110 [LYS]	C:10 [G]	3.29		sugar:SC	69.5
A:111 [LYS]	C:6 [OMC]	2.79	C:24 [OMG]		75.96
A:111 [LYS]	C:7 [U]	2.87	C:23 [C]		75.96
A:113 [LYS]	C:10 [G]	2.68		base:SC, base:SC	62.35
A:136 [HIS]	C:18 [G]	4.68	C:13 [C]		97.78
A:140 [ASN]	C:18 [G]	4.45	C:13 [C]		81.2
A:141 [GLN]	C:18 [G]	4.64	C:13 [C]		27.77
A:142 [GLY]	C:17 [A]	3.26			96.15
A:143 [ASP]	C:17 [A]	3.57			37.27

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

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