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All interfaces > All interologs > Interface groups > group21 > 7O7Y_BL_B5

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Licorice
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Licorice
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Conservation*

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Rim - Core

Contacts -

7O7Y_BL
7O7Y_B5
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
BL:2 [ALA] B5:1468 [U] 3.19 B5:1287 [A] 86.95
BL:2 [ALA] B5:1469 [U] 2.7 B5:1286 [A] 86.95
BL:2 [ALA] B5:1636 [G] 4.01 B5:1629 [C] 86.95
BL:2 [ALA] B5:1637 [A] 3.94 B5:1628 [U] 86.95
BL:3 [PRO] B5:1468 [U] 4.53 B5:1287 [A] 40.67
BL:3 [PRO] B5:1637 [A] 3.27 B5:1628 [U] 40.67
BL:3 [PRO] B5:1638 [PSU] 4.19 B5:1627 [U] 40.67
BL:4 [SER] B5:1467 [G] 4.96 B5:1288 [C] 50.56
BL:4 [SER] B5:1468 [U] 3.6 B5:1287 [A] 50.56
BL:4 [SER] B5:1638 [PSU] 3.84 B5:1627 [U] 50.56
BL:4 [SER] B5:1788 [U] 4.72 B5:1642 [U] 50.56
BL:4 [SER] B5:1789 [A] 3.91 50.56
BL:5 [ARG] B5:1637 [A] 4.84 B5:1628 [U] 65.33
BL:5 [ARG] B5:1638 [PSU] 2.75 B5:1627 [U] 65.33
BL:5 [ARG] B5:1639 [A] 4.39 B5:1626 [U] 65.33
BL:5 [ARG] B5:1788 [U] 2.85 B5:1642 [U] base/AA stacks 65.33
BL:5 [ARG] B5:1789 [A] 2.88 65.33
BL:8 [MET] B5:1288 [C] 3.46 B5:1467 [G] 49.82
BL:8 [MET] B5:1289 [A] 4.1 B5:1466 [U] 49.82
BL:10 [LEU] B5:1287 [A] 3.4 B5:1468 [U] 69.93
BL:10 [LEU] B5:1288 [C] 3.3 B5:1467 [G] 69.93
BL:11 [LYS] B5:90 [G] 4.23 B5:94 [A] 75.5
BL:11 [LYS] B5:94 [A] 3.01 B5:90 [G] 75.5
BL:11 [LYS] B5:95 [G] 2.61 B5:89 [C] base:SC 75.5
BL:11 [LYS] B5:96 [U] 3.92 B5:88 [A] 75.5
BL:12 [PRO] B5:95 [G] 4.81 B5:89 [C] 46.82
BL:12 [PRO] B5:96 [U] 3.69 B5:88 [A] 46.82
BL:12 [PRO] B5:1470 [A] 3.53 B5:1285 [U] 46.82
BL:13 [HIS] B5:85 [G] 3.18 base/AA stacks 89.75
BL:13 [HIS] B5:96 [U] 3.37 B5:88 [A] 89.75
BL:13 [HIS] B5:97 [G] 2.69 B5:87 [A] base:SC 89.75
BL:14 [PHE] B5:96 [U] 4.19 B5:88 [A] 61.04
BL:14 [PHE] B5:1286 [A] 3.68 B5:1469 [U] 61.04
BL:14 [PHE] B5:1470 [A] 3.32 B5:1285 [U] 61.04
BL:14 [PHE] B5:1471 [G] 3.92 B5:1284 [OMC] 61.04
BL:15 [HIS] B5:45 [U] 5.0 B5:36 [U] 68.86
BL:15 [HIS] B5:46 [U] 3.57 68.86
BL:15 [HIS] B5:47 [A] 4.94 B5:34 [A] 68.86
BL:15 [HIS] B5:95 [G] 3.22 B5:89 [C] 68.86
BL:15 [HIS] B5:96 [U] 2.86 B5:88 [A] 68.86
BL:15 [HIS] B5:1470 [A] 3.47 B5:1285 [U] 68.86
BL:15 [HIS] B5:1471 [G] 3.71 B5:1284 [OMC] 68.86
BL:16 [LYS] B5:46 [U] 3.27 91.27
BL:16 [LYS] B5:47 [A] 3.59 B5:34 [A] 91.27
BL:16 [LYS] B5:48 [G] 3.56 91.27
BL:16 [LYS] B5:96 [U] 4.19 B5:88 [A] 91.27
BL:16 [LYS] B5:97 [G] 2.64 B5:87 [A] 91.27
BL:17 [ASP] B5:46 [U] 4.9 55.92
BL:17 [ASP] B5:47 [A] 3.3 B5:34 [A] 55.92
BL:17 [ASP] B5:1604 [U] 4.19 B5:1480 [A] 55.92
BL:18 [TRP] B5:1285 [U] 4.08 B5:1470 [A] 57.08
BL:18 [TRP] B5:1471 [G] 2.51 B5:1284 [OMC] sugar:SC 57.08
BL:18 [TRP] B5:1473 [A] 4.8 B5:1283 [U] 57.08
BL:19 [GLN] B5:1471 [G] 4.69 B5:1284 [OMC] 69.04
BL:19 [GLN] B5:1472 [G] 3.65 69.04
BL:19 [GLN] B5:1473 [A] 2.84 B5:1283 [U] base:SC 69.04
BL:20 [ARG] B5:49 [U] 4.94 B5:33 [A] 25.38
BL:20 [ARG] B5:50 [C] 3.42 B5:32 [G] 25.38
BL:25 [TRP] B5:80 [C] 3.44 B5:103 [G] 45.17
BL:25 [TRP] B5:81 [C] 3.89 B5:102 [G] 45.17
BL:25 [TRP] B5:1304 [G] 3.66 B5:1323 [C] 45.17
BL:25 [TRP] B5:1305 [G] 3.97 B5:1320 [C] 45.17
BL:26 [PHE] B5:1315 [A] 3.43 76.59
BL:27 [ASN] B5:338 [A] 4.69 78.01
BL:27 [ASN] B5:339 [C] 4.88 B8:33 [G] 78.01
BL:28 [GLN] B5:1304 [G] 3.02 B5:1323 [C] 88.18
BL:28 [GLN] B5:1305 [G] 2.59 B5:1320 [C] 88.18
BL:29 [PRO] B5:1315 [A] 3.35 71.42
BL:29 [PRO] B5:1316 [A] 3.91 71.42
BL:31 [ARG] B5:337 [U] 3.05 65.25
BL:31 [ARG] B5:338 [A] 2.83 65.25
BL:31 [ARG] B5:1305 [G] 4.32 B5:1320 [C] 65.25
BL:32 [LYS] B5:1305 [G] 4.15 B5:1320 [C] 85.64
BL:32 [LYS] B5:1306 [G] 2.75 B5:1319 [C] base:SC 85.64
BL:33 [ILE] B5:1310 [G] 3.43 14.43
BL:33 [ILE] B5:1315 [A] 4.71 14.43
BL:35 [ARG] B5:105 [A] 3.12 B5:78 [U] 95.54
BL:35 [ARG] B5:106 [A] 4.64 95.54
BL:35 [ARG] B5:336 [A] 3.15 B5:77 [U] 95.54
BL:35 [ARG] B5:337 [U] 3.1 95.54
BL:35 [ARG] B5:1305 [G] 3.92 B5:1320 [C] 95.54
BL:35 [ARG] B5:1306 [G] 3.6 B5:1319 [C] 95.54
BL:36 [ARG] B5:1307 [C] 3.75 B5:1318 [G] 66.42
BL:36 [ARG] B5:1308 [U] 2.39 66.42
BL:36 [ARG] B5:1309 [C] 4.06 66.42
BL:36 [ARG] B5:1310 [G] 3.13 66.42
BL:37 [LYS] B5:185 [C] 4.7 0.34
BL:37 [LYS] B5:1310 [G] 3.47 0.34
BL:39 [ARG] B5:105 [A] 3.48 B5:78 [U] 93.24
BL:39 [ARG] B5:106 [A] 2.93 93.24
BL:39 [ARG] B5:1306 [G] 2.81 B5:1319 [C] 93.24
BL:39 [ARG] B5:1307 [C] 2.84 B5:1318 [G] 93.24
BL:40 [GLN] B5:1308 [U] 4.5 38.4
BL:40 [GLN] B5:1310 [G] 2.94 38.4
BL:42 [ARG] B5:107 [G] 3.07 84.63
BL:42 [ARG] B5:108 [A] 3.97 84.63
BL:44 [ARG] B5:185 [C] 3.07 base/AA stacks 73.93
BL:54 [PRO] B5:108 [A] 4.73 35.81
BL:56 [ARG] B5:107 [G] 3.3 base/AA stacks 88.89
BL:58 [ILE] B5:74 [G] 4.86 B5:67 [C] 69.23
BL:59 [VAL] B5:74 [G] 3.45 B5:67 [C] 93.63
BL:59 [VAL] B5:75 [G] 3.59 B5:65 [A] 93.63
BL:60 [ARG] B5:72 [C] 3.21 base/AA stacks 72.93
BL:60 [ARG] B5:73 [A] 2.73 B5:68 [U] sugar:BB 72.93
BL:60 [ARG] B5:74 [G] 3.15 B5:67 [C] 72.93
BL:61 [CYS] B5:71 [C] 4.52 B5:69 [A] 66.76
BL:61 [CYS] B5:73 [A] 3.45 B5:68 [U] 66.76
BL:61 [CYS] B5:101 [A] 4.88 B5:82 [U] 66.76
BL:61 [CYS] B5:102 [G] 3.58 B5:81 [C] 66.76
BL:61 [CYS] B5:103 [G] 4.42 B5:80 [C] 66.76
BL:62 [PRO] B5:69 [A] 4.48 B5:71 [C] 68.87
BL:62 [PRO] B5:71 [C] 3.33 B5:69 [A] 68.87
BL:62 [PRO] B5:73 [A] 3.44 B5:68 [U] 68.87
BL:62 [PRO] B5:74 [G] 3.39 B5:67 [C] 68.87
BL:62 [PRO] B5:101 [A] 3.35 B5:82 [U] 68.87
BL:62 [PRO] B5:102 [G] 3.23 B5:81 [C] 68.87
BL:63 [THR] B5:69 [A] 3.95 B5:71 [C] 87.87
BL:63 [THR] B5:70 [A] 3.6 87.87
BL:63 [THR] B5:71 [C] 3.1 B5:69 [A] base:BB 87.87
BL:63 [THR] B5:101 [A] 3.16 B5:82 [U] sugar:SC 87.87
BL:64 [VAL] B5:71 [C] 3.5 B5:69 [A] 33.45
BL:65 [ARG] B5:101 [A] 3.88 B5:82 [U] 78.45
BL:65 [ARG] B5:1326 [G] 3.32 B5:1301 [C] 78.45
BL:65 [ARG] B5:1327 [G] 4.26 B5:1300 [U] 78.45
BL:66 [TYR] B5:101 [A] 3.41 B5:82 [U] 83.11
BL:66 [TYR] B5:102 [G] 3.16 B5:81 [C] 83.11
BL:66 [TYR] B5:1325 [U] 3.74 B5:1324 [G] 83.11
BL:66 [TYR] B5:1326 [G] 2.32 B5:1301 [C] 83.11
BL:67 [HIS] B5:71 [C] 3.2 B5:69 [A] sugar:SC 91.8
BL:67 [HIS] B5:72 [C] 3.43 91.8
BL:68 [THR] B5:72 [C] 3.97 47.4
BL:71 [ARG] B5:74 [G] 2.87 B5:67 [C] sugar:SC 91.95
BL:71 [ARG] B5:75 [G] 3.04 B5:65 [A] 91.95
BL:71 [ARG] B5:101 [A] 4.91 B5:82 [U] 91.95
BL:71 [ARG] B5:102 [G] 2.91 B5:81 [C] 91.95
BL:71 [ARG] B5:103 [G] 3.23 B5:80 [C] 91.95
BL:72 [ALA] B5:75 [G] 4.22 B5:65 [A] 49.28
BL:73 [GLY] B5:74 [G] 4.95 B5:67 [C] 95.41
BL:73 [GLY] B5:75 [G] 3.31 B5:65 [A] 95.41
BL:74 [ARG] B5:64 [A] 3.44 B5:333 [U] 88.47
BL:74 [ARG] B5:75 [G] 3.28 B5:65 [A] 88.47
BL:74 [ARG] B5:76 [A] 2.88 B5:335 [A] base:SC 88.47
BL:74 [ARG] B5:107 [G] 3.9 88.47
BL:74 [ARG] B5:108 [A] 3.92 88.47
BL:74 [ARG] B5:109 [G] 2.4 B5:332 [C] 88.47
BL:78 [LEU] B5:159 [C] 3.35 51.52
BL:78 [LEU] B5:160 [G] 4.13 B5:275 [C] 51.52
BL:82 [ARG] B5:160 [G] 3.32 B5:275 [C] 74.46
BL:87 [HIS] B5:268 [G] 4.29 B5:167 [C] 62.13
BL:87 [HIS] B5:269 [G] 4.28 B5:166 [C] 62.13
BL:88 [LYS] B5:159 [C] 3.0 base:SC, sugar:SC 31.93
BL:88 [LYS] B5:160 [G] 5.0 B5:275 [C] 31.93
BL:88 [LYS] B5:161 [G] 4.98 B5:274 [C] 31.93
BL:92 [ARG] B5:109 [G] 3.31 B5:332 [C] 56.91
BL:92 [ARG] B5:110 [C] 3.8 B5:331 [G] 56.91
BL:98 [VAL] B5:109 [G] 4.47 B5:332 [C] 95.57
BL:99 [ASP] B5:75 [G] 3.0 B5:65 [A] sugar:SC, sugar:SC 98.97
BL:100 [PRO] B5:159 [C] 3.58 65.09
BL:101 [ARG] B5:64 [A] 3.68 B5:333 [U] 98.76
BL:101 [ARG] B5:65 [A] 3.46 B5:75 [G] base/AA stacks 98.76
BL:101 [ARG] B5:75 [G] 2.69 B5:65 [A] sugar:SC, sugar:SC 98.76
BL:101 [ARG] B5:76 [A] 3.08 B5:335 [A] 98.76
BL:101 [ARG] B5:326 [C] 4.48 B5:311 [G] 98.76
BL:102 [ARG] B5:74 [G] 3.99 B5:67 [C] 98.79
BL:102 [ARG] B5:75 [G] 3.36 B5:65 [A] 98.79
BL:103 [ARG] B5:67 [C] 4.06 B5:74 [G] 62.42
BL:103 [ARG] B5:68 [U] 4.73 B5:73 [A] 62.42
BL:103 [ARG] B5:73 [A] 3.16 B5:68 [U] 62.42
BL:103 [ARG] B5:74 [G] 2.49 B5:67 [C] base:SC, base:SC 62.42
BL:103 [ARG] B5:75 [G] 2.91 B5:65 [A] base:BB 62.42
BL:103 [ARG] B5:325 [U] 3.2 B5:312 [G] 62.42
BL:103 [ARG] B5:326 [C] 2.77 B5:311 [G] 62.42
BL:105 [LYS] B5:71 [C] 4.69 B5:69 [A] 47.71
BL:105 [LYS] B5:73 [A] 3.43 B5:68 [U] 47.71
BL:105 [LYS] B5:325 [U] 4.83 B5:312 [G] 47.71
BL:106 [SER] B5:72 [C] 4.51 92.45
BL:106 [SER] B5:73 [A] 3.14 B5:68 [U] 92.45
BL:109 [SER] B5:73 [A] 4.67 B5:68 [U] 69.21
BL:115 [GLN] B5:521 [C] 2.81 B5:636 [G] 46.98
BL:115 [GLN] B5:522 [U] 3.49 B5:635 [G] 46.98
BL:118 [LYS] B5:521 [C] 4.71 B5:636 [G] 69.32
BL:118 [LYS] B5:522 [U] 4.08 B5:635 [G] 69.32
BL:129 [ARG] B5:172 [C] 4.76 B5:264 [C] 70.8
BL:129 [ARG] B5:173 [C] 3.57 B5:263 [G] 70.8
BL:129 [ARG] B5:174 [C] 4.74 B5:262 [G] 70.8
BL:135 [LYS] B5:171 [U] 4.16 58.31
BL:135 [LYS] B5:172 [C] 4.37 B5:264 [C] 58.31
BL:136 [LYS] B5:169 [A] 4.37 57.14
BL:157 [ILE] B5:1322 [C] 4.35 46.13
BL:158 [ARG] B5:1322 [C] 3.27 base/AA stacks 3.98
BL:159 [ASN] B5:1322 [C] 3.53 base:BB 36.28
BL:160 [VAL] B5:638 [G] 4.23 B5:519 [C] 0.0
BL:160 [VAL] B5:639 [G] 4.41 B5:518 [C] 0.0
BL:162 [LYS] B5:637 [C] 3.64 B5:520 [G] 0.03
BL:162 [LYS] B5:638 [G] 2.38 B5:519 [C] 0.03
BL:163 [LYS] B5:511 [A] 3.2 0.76
BL:163 [LYS] B5:512 [U] 2.64 B5:643 [A] 0.76
BL:163 [LYS] B5:513 [C] 2.95 B5:642 [G] 0.76
BL:165 [LYS] B5:513 [C] 3.66 B5:642 [G] 37.37
BL:165 [LYS] B5:514 [U] 3.56 B5:641 [G] 37.37
BL:166 [ALA] B5:513 [C] 3.26 B5:642 [G] 12.55
BL:177 [LYS] B5:1434 [G] 3.46 B5:1441 [C] 40.54
BL:177 [LYS] B5:1435 [C] 4.6 B5:1439 [G] 40.54
BL:179 [PHE] B5:1339 [U] 3.9 B5:1332 [A] 54.27
BL:179 [PHE] B5:1340 [G] 3.26 54.27
BL:179 [PHE] B5:1443 [G] 3.64 B5:1432 [C] 54.27
BL:180 [ALA] B5:1442 [G] 4.22 B5:1433 [C] 4.22
BL:183 [ARG] B5:1338 [G] 2.88 B5:1333 [U] 83.66
BL:183 [ARG] B5:1339 [U] 2.88 B5:1332 [A] 83.66
BL:183 [ARG] B5:1442 [G] 3.41 B5:1433 [C] 83.66
BL:183 [ARG] B5:1443 [G] 2.71 B5:1432 [C] 83.66
BL:184 [MET] B5:1434 [G] 3.52 B5:1441 [C] 25.77
BL:184 [MET] B5:1435 [C] 4.92 B5:1439 [G] 25.77
BL:184 [MET] B5:1437 [G] 4.25 25.77
BL:184 [MET] B5:1441 [C] 4.93 B5:1434 [G] 25.77
BL:184 [MET] B5:1442 [G] 3.72 B5:1433 [C] 25.77
BL:185 [ALA] B5:1437 [G] 4.89 70.64
BL:186 [ARG] B5:1338 [G] 3.5 B5:1333 [U] 83.95
BL:186 [ARG] B5:1339 [U] 3.25 B5:1332 [A] 83.95
BL:187 [ALA] B5:1441 [C] 3.44 B5:1434 [G] 39.1
BL:187 [ALA] B5:1442 [G] 3.64 B5:1433 [C] 39.1
BL:188 [ASN] B5:1437 [G] 2.69 base/AA stacks 56.98
BL:188 [ASN] B5:1441 [C] 4.61 B5:1434 [G] 56.98
BL:189 [ALA] B5:4103 [G] 4.5 B5:320 [C] 49.55
BL:190 [ARG] B5:1337 [G] 4.8 B5:1334 [G] 69.3
BL:190 [ARG] B5:1441 [C] 3.91 B5:1434 [G] 69.3
BL:190 [ARG] B5:1442 [G] 2.66 B5:1433 [C] 69.3
BL:190 [ARG] B5:4097 [U] 4.8 B5:4109 [A] 69.3
BL:190 [ARG] B5:4104 [U] 4.94 B5:319 [A] 69.3
BL:191 [LEU] B5:1440 [C] 4.35 1.02
BL:191 [LEU] B5:1441 [C] 3.65 B5:1434 [G] 1.02
BL:193 [GLY] B5:4103 [G] 3.29 B5:320 [C] 76.39
BL:193 [GLY] B5:4104 [U] 3.92 B5:319 [A] 76.39
BL:194 [ILE] B5:4103 [G] 4.21 B5:320 [C] 19.43
BL:194 [ILE] B5:4104 [U] 3.47 B5:319 [A] 19.43
BL:194 [ILE] B5:4105 [U] 3.8 B5:318 [A] 19.43
BL:195 [ARG] B5:1439 [G] 3.23 B5:1435 [C] sugar:SC 77.29
BL:195 [ARG] B5:1441 [C] 3.3 B5:1434 [G] sugar:SC 77.29
BL:197 [LYS] B5:4104 [U] 3.32 B5:319 [A] 73.96
BL:197 [LYS] B5:4105 [U] 2.85 B5:318 [A] 73.96
BL:198 [ARG] B5:1440 [C] 3.19 sugar:SC base/AA stacks 66.7

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group21 7O7Y_BL_B5 BL: Ribosomal protein el13, Oryctolagus cuniculus (natural) B5: 28s rRNA, Oryctolagus cuniculus (natural) RPL13 Eukaryotic large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 1

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_I_1 7O7Y_BL_B5 0.69 0.92 1.42 0.3 RPL13 Eukaryotic large subunit ribosomal RNA compare