Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
View
Focus on
InterfaceRNA
Protein
All
Show chains
Interface
show interface as licoriceCommon contacts -
6AZ3_N
|
6AZ3_8
|
7O7Y_BI
|
7O7Y_B7
|
Conserved?
|
---|---|---|---|---|
N:202 [PRO] | 8:65 [C] | BI:202 [ASN] | B7:63 [C] | ✔ |
N:131 [ILE] | 8:93 [U] | BI:131 [ILE] | B7:91 [C] | ✔ |
N:55 [ARG] | 8:92 [A] | BI:55 [ASP] | B7:90 [A] | ✔ |
N:57 [LEU] | 8:92 [A] | BI:57 [TYR] | B7:90 [A] | ✔ |
N:57 [LEU] | 8:93 [U] | BI:57 [TYR] | B7:91 [C] | ✔ |
N:201 [ALA] | 8:65 [C] | BI:201 [PRO] | B7:63 [C] | ✔ |
N:201 [ALA] | 8:107 [U] | BI:201 [PRO] | B7:105 [C] | ✔ |
N:11 [PHE] | 8:91 [G] | BI:11 [TYR] | B7:89 [G] | ✔ |
N:11 [PHE] | 8:92 [A] | BI:11 [TYR] | B7:90 [A] | ✔ |
N:10 [ARG] | 8:91 [G] | BI:10 [ARG] | B7:89 [G] | ✔ |
N:203 [LYS] | 8:65 [C] | BI:203 [ARG] | B7:63 [C] | ✔ |
N:203 [LYS] | 8:66 [A] | BI:203 [ARG] | B7:64 [G] | ✔ |
N:203 [LYS] | 8:67 [G] | BI:203 [ARG] | B7:65 [G] | ✔ |
N:202 [PRO] | 8:66 [A] | BI:202 [ASN] | B7:64 [G] | ❌ 6AZ3_N_8 |
N:202 [PRO] | 8:107 [U] | BI:202 [ASN] | B7:105 [C] | ❌ 6AZ3_N_8 |
N:203 [LYS] | 8:107 [U] | BI:203 [ARG] | B7:105 [C] | ❌ 6AZ3_N_8 |
N:131 [ILE] | 8:94 [G] | BI:131 [ILE] | B7:92 [C] | ❌ 6AZ3_8:94 no longer at interface |
N:175 [ASN] | 8:105 [C] | BI:175 [LYS] | B7:103 [A] | ❌ 6AZ3_N:175, 6AZ3_8:105 no longer at interface |
N:199 [LEU] | 8:106 [C] | BI:199 [TYR] | B7:104 [C] | ❌ 6AZ3_N:199, 6AZ3_8:106 no longer at interface |
N:203 [LYS] | 8:106 [C] | BI:203 [ARG] | B7:104 [C] | ❌ 6AZ3_8:106 no longer at interface |
N:203 [LYS] | 8:108 [G] | BI:203 [ARG] | B7:106 [G] | ❌ 6AZ3_8:108 no longer at interface |
N:12 [CYS] | 8:93 [U] | BI:12 [CYS] | B7:91 [C] | ❌ 6AZ3_N:12 no longer at interface |
N:199 [LEU] | 8:107 [U] | BI:199 [TYR] | B7:105 [C] | ❌ 6AZ3_N:199 no longer at interface |
N:56 [GLU] | 8:91 [G] | BI:56 [GLU] | B7:89 [G] | ❌ 6AZ3_N:56 no longer at interface |
N:56 [GLU] | 8:92 [A] | BI:56 [GLU] | B7:90 [A] | ❌ 6AZ3_N:56 no longer at interface |
N:58 [GLU] | 8:92 [A] | BI:58 [GLU] | B7:90 [A] | ❌ 6AZ3_N:58 no longer at interface |
Properties of this pair
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
---|---|---|---|---|---|---|---|---|---|---|---|---|
Ribosomal protein L10e | 5S ribosomal RNA | 0.98 | 0.81 | 0.25 | 0.97 | 0.97 | 1.0 | 1.0 | 0.67 | 0.75 | 0.17 | 0.77 |
Other pairs involving 6AZ3_N_8 or 7O7Y_BI_B7
Total number of entries: 1
Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
---|---|---|---|---|---|---|---|---|
6AZ3_N_8 | 7O7Y_BI_B7 | 0.67 | 0.98 | 0.81 | 0.25 | Ribosomal protein L10e | 5S ribosomal RNA | compare |