Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 6AZ3_R
|
6AZ3_8
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| R:41 [SER] | 8:97 [U] | 4.98 | 8:83 [A] | 0.0 | ||
| R:41 [SER] | 8:98 [C] | 3.24 | 8:82 [G] | 0.0 | ||
| R:42 [ARG] | 8:96 [C] | 4.02 | 8:84 [G] | 0.0 | ||
| R:42 [ARG] | 8:97 [U] | 3.05 | 8:83 [A] | 0.0 | ||
| R:45 [ARG] | 8:95 [A] | 4.79 | 8:85 [G] | 0.0 | ||
| R:45 [ARG] | 8:96 [C] | 2.51 | 8:84 [G] | 0.0 | ||
| R:45 [ARG] | 8:97 [U] | 3.43 | 8:83 [A] | 0.0 | ||
| R:48 [ARG] | 8:77 [G] | 3.38 | 0.0 | |||
| R:48 [ARG] | 8:97 [U] | 4.45 | 8:83 [A] | 0.0 | ||
| R:48 [ARG] | 8:98 [C] | 4.93 | 8:82 [G] | 0.0 | ||
| R:48 [ARG] | 8:101 [G] | 3.67 | 8:79 [A] | 0.0 | ||
| R:49 [VAL] | 8:77 [G] | 3.94 | 0.0 | |||
| R:49 [VAL] | 8:78 [U] | 3.96 | 8:102 [A] | 0.0 | ||
| R:50 [LYS] | 8:77 [G] | 4.52 | 0.0 | |||
| R:52 [LYS] | 8:76 [A] | 3.53 | 8:103 [A] | base:SC | 0.0 | |
| R:52 [LYS] | 8:77 [G] | 3.18 | sugar:SC | 0.0 | ||
| R:53 [VAL] | 8:77 [G] | 4.6 | 0.0 | |||
| R:54 [LYS] | 8:77 [G] | 3.42 | 0.0 | |||
| R:54 [LYS] | 8:100 [G] | 3.22 | 8:80 [C] | 0.0 | ||
| R:54 [LYS] | 8:101 [G] | 2.96 | 8:79 [A] | base:SC | 0.0 | |
| R:55 [ALA] | 8:99 [G] | 4.62 | 8:81 [U] | 0.0 | ||
| R:56 [THR] | 8:99 [G] | 3.85 | 8:81 [U] | 0.0 | ||
| R:56 [THR] | 8:100 [G] | 3.25 | 8:80 [C] | 0.0 | ||
| R:83 [TYR] | 8:94 [G] | 3.1 | 8:87 [C] | sugar:SC | 0.0 | |
| R:83 [TYR] | 8:95 [A] | 3.54 | 8:85 [G] | 0.0 | ||
| R:85 [GLN] | 8:88 [A] | 3.93 | 8:93 [U] | 0.0 | ||
| R:85 [GLN] | 8:92 [A] | 3.06 | 8:89 [G] | base:SC | 0.0 | |
| R:85 [GLN] | 8:93 [U] | 3.05 | 8:88 [A] | sugar:SC | 0.0 | |
| R:85 [GLN] | 8:94 [G] | 2.87 | 8:87 [C] | 0.0 | ||
| R:86 [ARG] | 8:91 [G] | 4.62 | 0.0 | |||
| R:89 [TYR] | 8:95 [A] | 4.75 | 8:85 [G] | 0.0 | ||
| R:89 [TYR] | 8:96 [C] | 4.04 | 8:84 [G] | 0.0 | ||
| R:119 [ARG] | 8:88 [A] | 3.87 | 8:93 [U] | 0.0 | ||
| R:121 [HIS] | 8:96 [C] | 3.25 | 8:84 [G] | 0.0 | ||
| R:121 [HIS] | 8:97 [U] | 3.86 | 8:83 [A] | 0.0 | ||
| R:122 [ASN] | 8:95 [A] | 2.27 | 8:85 [G] | sugar:SC | 0.0 | |
| R:122 [ASN] | 8:96 [C] | 4.01 | 8:84 [G] | 0.0 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group23 | 6AZ3_R_8 | R: 60s ribosomal protein l18a, Leishmania donovani (natural) 8: rRNA 5s, Leishmania donovani (natural) | A0A3Q8IT55 | RplX-like | 5S ribosomal RNA | ✔ |
|
Interologs
Total number of interologs for this interface: 1
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 6AZ3_R_8 | 7O7Y_BS_B7 | 0.67 | 0.92 | 1.48 | 0.33 | RplX-like | 5S ribosomal RNA | compare |