RNAprotDB

All interfaces > All interologs > Interface groups > group23 > 6AZ3_R_8 vs 7O7Y_BS_B7

Interface analysis


mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Structure
Structure (with hetatm)
Chain
Chainbow

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show interface as licorice

Common contacts -

6AZ3_R
6AZ3_8
7O7Y_BS
7O7Y_B7
Conserved?
R:119 [ARG] 8:88 [A] BS:120 [ARG] B7:86 [G] ✔
R:48 [ARG] 8:77 [G] BS:49 [SER] B7:75 [G] ✔
R:56 [THR] 8:99 [G] BS:57 [SER] B7:97 [G] ✔
R:56 [THR] 8:100 [G] BS:57 [SER] B7:98 [G] ✔
R:55 [ALA] 8:99 [G] BS:56 [LYS] B7:97 [G] ✔
R:45 [ARG] 8:95 [A] BS:46 [TYR] B7:93 [G] ✔
R:45 [ARG] 8:96 [C] BS:46 [TYR] B7:94 [C] ✔
R:45 [ARG] 8:97 [U] BS:46 [TYR] B7:95 [C] ✔
R:85 [GLN] 8:88 [A] BS:87 [ARG] B7:86 [G] ✔
R:54 [LYS] 8:77 [G] BS:55 [LYS] B7:75 [G] ✔
R:54 [LYS] 8:100 [G] BS:55 [LYS] B7:98 [G] ✔
R:54 [LYS] 8:101 [G] BS:55 [LYS] B7:99 [G] ✔
R:53 [VAL] 8:77 [G] BS:54 [MET] B7:75 [G] ✔
R:49 [VAL] 8:77 [G] BS:50 [GLN] B7:75 [G] ✔
R:49 [VAL] 8:78 [U] BS:50 [GLN] B7:76 [U] ✔
R:52 [LYS] 8:76 [A] BS:53 [LYS] B7:74 [A] ✔
R:52 [LYS] 8:77 [G] BS:53 [LYS] B7:75 [G] ✔
R:41 [SER] 8:97 [U] BS:42 [SER] B7:95 [C] ✔
R:41 [SER] 8:98 [C] BS:42 [SER] B7:96 [U] ✔
R:50 [LYS] 8:77 [G] BS:51 [LEU] B7:75 [G] ✔
R:122 [ASN] 8:95 [A] BS:123 [SER] B7:93 [G] ✔
R:121 [HIS] 8:96 [C] BS:122 [HIS] B7:94 [C] ✔
R:83 [TYR] 8:95 [A] BS:85 [ASP] B7:93 [G] ✔
R:42 [ARG] 8:96 [C] BS:43 [ARG] B7:94 [C] ✔
R:42 [ARG] 8:97 [U] BS:43 [ARG] B7:95 [C] ✔
R:48 [ARG] 8:97 [U] BS:49 [SER] B7:95 [C] ❌ 7O7Y_BS_B7
R:48 [ARG] 8:98 [C] BS:49 [SER] B7:96 [U] ❌ 7O7Y_BS_B7
R:48 [ARG] 8:101 [G] BS:49 [SER] B7:99 [G] ❌ 7O7Y_BS_B7
R:122 [ASN] 8:96 [C] BS:123 [SER] B7:94 [C] ❌ 7O7Y_BS_B7
R:121 [HIS] 8:97 [U] BS:122 [HIS] B7:95 [C] ❌ 7O7Y_BS_B7
R:121 [HIS] 8:95 [A] BS:122 [HIS] B7:93 [G] ❌ 6AZ3_R_8
R:48 [ARG] 8:78 [U] BS:49 [SER] B7:76 [U] ❌ 6AZ3_R_8
R:49 [VAL] 8:96 [C] BS:50 [GLN] B7:94 [C] ❌ 6AZ3_R_8
R:55 [ALA] 8:98 [C] BS:56 [LYS] B7:96 [U] ❌ 6AZ3_R_8
R:86 [ARG] 8:91 [G] BS:88 [SER] B7:89 [G] ❌ 7O7Y_BS:88, 7O7Y_B7:89 no longer at interface
R:85 [GLN] 8:92 [A] BS:87 [ARG] B7:90 [A] ❌ 7O7Y_B7:90 no longer at interface
R:85 [GLN] 8:93 [U] BS:87 [ARG] B7:91 [C] ❌ 7O7Y_B7:91 no longer at interface
R:85 [GLN] 8:94 [G] BS:87 [ARG] B7:92 [C] ❌ 7O7Y_B7:92 no longer at interface
R:83 [TYR] 8:94 [G] BS:85 [ASP] B7:92 [C] ❌ 7O7Y_B7:92 no longer at interface
R:119 [ARG] 8:87 [C] BS:120 [ARG] B7:85 [G] ❌ 6AZ3_8:87 no longer at interface
R:119 [ARG] 8:89 [G] BS:120 [ARG] B7:87 [G] ❌ 6AZ3_8:89 no longer at interface
R:121 [HIS] 8:87 [C] BS:122 [HIS] B7:85 [G] ❌ 6AZ3_8:87 no longer at interface
R:52 [LYS] 8:75 [U] BS:53 [LYS] B7:73 [U] ❌ 6AZ3_8:75 no longer at interface
R:85 [GLN] 8:89 [G] BS:87 [ARG] B7:87 [G] ❌ 6AZ3_8:89 no longer at interface
R:124 [GLU] 8:96 [C] BS:125 [GLN] B7:94 [C] ❌ 6AZ3_R:124 no longer at interface
R:51 [ASN] 8:77 [G] BS:52 [LYS] B7:75 [G] ❌ 6AZ3_R:51 no longer at interface

logo_download Export the table of contacts

Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
RplX-like 5S ribosomal RNA 0.92 1.48 0.33 0.88 0.97 0.89 0.79 0.67 0.65 0.29 0.57


Other pairs involving 6AZ3_R_8 or 7O7Y_BS_B7

Total number of entries: 1

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_R_8 7O7Y_BS_B7 0.67 0.92 1.48 0.33 RplX-like 5S ribosomal RNA compare