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All interfaces > All interologs > Interface groups > group23 > 7O7Y_BS_B7

Interface analysis

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

7O7Y_BS
7O7Y_B7
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
BS:1 [MET] B7:94 [C] 3.97 B7:82 [G] 48.3
BS:1 [MET] B7:95 [C] 4.5 B7:81 [G] 48.3
BS:42 [SER] B7:95 [C] 3.68 B7:81 [G] 97.06
BS:42 [SER] B7:96 [U] 2.6 B7:80 [U] 97.06
BS:43 [ARG] B7:94 [C] 3.5 B7:82 [G] 79.4
BS:43 [ARG] B7:95 [C] 2.96 B7:81 [G] 79.4
BS:46 [TYR] B7:93 [G] 4.62 B7:83 [A] 74.0
BS:46 [TYR] B7:94 [C] 2.6 B7:82 [G] 74.0
BS:46 [TYR] B7:95 [C] 3.18 B7:81 [G] 74.0
BS:49 [SER] B7:75 [G] 3.07 61.63
BS:49 [SER] B7:76 [U] 4.69 B7:100 [A] 61.63
BS:50 [GLN] B7:75 [G] 3.65 52.74
BS:50 [GLN] B7:76 [U] 4.41 B7:100 [A] 52.74
BS:50 [GLN] B7:94 [C] 3.91 B7:82 [G] 52.74
BS:51 [LEU] B7:75 [G] 4.1 45.37
BS:52 [LYS] B7:75 [G] 3.33 44.48
BS:53 [LYS] B7:73 [U] 4.65 B7:102 [U] 77.48
BS:53 [LYS] B7:74 [A] 2.89 B7:101 [A] sugar:SC 77.48
BS:53 [LYS] B7:75 [G] 3.18 77.48
BS:54 [MET] B7:75 [G] 4.33 49.07
BS:55 [LYS] B7:75 [G] 3.94 91.34
BS:55 [LYS] B7:98 [G] 3.38 B7:78 [C] 91.34
BS:55 [LYS] B7:99 [G] 2.84 B7:77 [A] base:SC 91.34
BS:56 [LYS] B7:96 [U] 4.62 B7:80 [U] 67.26
BS:56 [LYS] B7:97 [G] 2.73 B7:79 [U] 67.26
BS:57 [SER] B7:97 [G] 4.78 B7:79 [U] 63.03
BS:57 [SER] B7:98 [G] 2.8 B7:78 [C] 63.03
BS:85 [ASP] B7:93 [G] 3.72 B7:83 [A] sugar:SC 40.02
BS:87 [ARG] B7:86 [G] 4.16 B7:91 [C] 84.09
BS:87 [ARG] B7:87 [G] 3.74 B7:90 [A] 84.09
BS:120 [ARG] B7:85 [G] 4.78 B7:92 [C] 80.51
BS:120 [ARG] B7:86 [G] 3.64 B7:91 [C] 80.51
BS:120 [ARG] B7:87 [G] 4.99 B7:90 [A] 80.51
BS:122 [HIS] B7:85 [G] 4.64 B7:92 [C] 61.44
BS:122 [HIS] B7:93 [G] 3.12 B7:83 [A] sugar:SC 61.44
BS:122 [HIS] B7:94 [C] 3.37 B7:82 [G] 61.44
BS:123 [SER] B7:93 [G] 4.07 B7:83 [A] 73.43
BS:125 [GLN] B7:94 [C] 4.74 B7:82 [G] 73.52

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group23 7O7Y_BS_B7 BS: Ribosomal protein el20, Oryctolagus cuniculus (natural) B7: 5s rRNA, Oryctolagus cuniculus (natural) RplX-like 5S ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 1

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_R_8 7O7Y_BS_B7 0.67 0.92 1.48 0.33 RplX-like 5S ribosomal RNA compare