Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
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Focus on
InterfaceRNA
Protein
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Show chains
Interface
show interface as licoriceCommon contacts -
6AZ3_U
|
6AZ3_3
|
7O7Y_BU
|
7O7Y_B5
|
Conserved?
|
---|---|---|---|---|
U:108 [ARG] | 3:51 [G] | BU:101 [ARG] | B5:2465 [G] | ✔ |
U:108 [ARG] | 3:52 [A] | BU:101 [ARG] | B5:2466 [A] | ✔ |
U:108 [ARG] | 3:153 [G] | BU:101 [ARG] | B5:2544 [U] | ✔ |
U:108 [ARG] | 3:154 [C] | BU:101 [ARG] | B5:2545 [C] | ✔ |
U:108 [ARG] | 3:155 [U] | BU:101 [ARG] | B5:2546 [G] | ✔ |
U:109 [ILE] | 3:51 [G] | BU:102 [VAL] | B5:2465 [G] | ✔ |
U:109 [ILE] | 3:52 [A] | BU:102 [VAL] | B5:2466 [A] | ✔ |
U:59 [GLY] | 3:60 [U] | BU:51 [GLY] | B5:2474 [U] | ✔ |
U:58 [ASN] | 3:60 [U] | BU:50 [ASN] | B5:2474 [U] | ✔ |
U:89 [TYR] | 3:60 [U] | BU:82 [TYR] | B5:2474 [U] | ✔ |
U:91 [LYS] | 3:50 [U] | BU:84 [LYS] | B5:2464 [A] | ✔ |
U:91 [LYS] | 3:51 [G] | BU:84 [LYS] | B5:2465 [G] | ✔ |
U:91 [LYS] | 3:52 [A] | BU:84 [LYS] | B5:2466 [A] | ✔ |
U:95 [LYS] | 3:52 [A] | BU:88 [LYS] | B5:2466 [A] | ✔ |
U:95 [LYS] | 3:53 [G] | BU:88 [LYS] | B5:2467 [G] | ✔ |
U:95 [LYS] | 3:54 [C] | BU:88 [LYS] | B5:2468 [U] | ✔ |
U:95 [LYS] | 3:55 [U] | BU:88 [LYS] | B5:2469 [U] | ✔ |
U:104 [ARG] | 3:53 [G] | BU:97 [ARG] | B5:2467 [G] | ✔ |
U:104 [ARG] | 3:54 [C] | BU:97 [ARG] | B5:2468 [U] | ✔ |
U:104 [ARG] | 3:55 [U] | BU:97 [ARG] | B5:2469 [U] | ✔ |
U:88 [LYS] | 3:49 [G] | BU:81 [ARG] | B5:2463 [G] | ✔ |
U:88 [LYS] | 3:50 [U] | BU:81 [ARG] | B5:2464 [A] | ✔ |
U:88 [LYS] | 3:51 [G] | BU:81 [ARG] | B5:2465 [G] | ✔ |
U:88 [LYS] | 3:52 [A] | BU:81 [ARG] | B5:2466 [A] | ✔ |
U:88 [LYS] | 3:61 [U] | BU:81 [ARG] | B5:2475 [PSU] | ✔ |
U:88 [LYS] | 3:62 [U] | BU:81 [ARG] | B5:2476 [U] | ✔ |
U:88 [LYS] | 3:63 [C] | BU:81 [ARG] | B5:2477 [C] | ✔ |
U:92 [TYR] | 3:59 [U] | BU:85 [TYR] | B5:2473 [U] | ✔ |
U:92 [TYR] | 3:60 [U] | BU:85 [TYR] | B5:2474 [U] | ✔ |
U:92 [TYR] | 3:61 [U] | BU:85 [TYR] | B5:2475 [PSU] | ✔ |
U:113 [GLY] | 3:50 [U] | BU:106 [SER] | B5:2464 [A] | ✔ |
U:57 [LEU] | 3:60 [U] | BU:49 [VAL] | B5:2474 [U] | ✔ |
U:56 [LYS] | 3:58 [C] | BU:48 [LYS] | B5:2472 [C] | ✔ |
U:56 [LYS] | 3:59 [U] | BU:48 [LYS] | B5:2473 [U] | ✔ |
U:56 [LYS] | 3:60 [U] | BU:48 [LYS] | B5:2474 [U] | ✔ |
U:87 [LYS] | 3:49 [G] | BU:80 [LYS] | B5:2463 [G] | ✔ |
U:87 [LYS] | 3:50 [U] | BU:80 [LYS] | B5:2464 [A] | ✔ |
U:85 [TYR] | 3:48 [G] | BU:78 [PHE] | B5:2462 [G] | ✔ |
U:99 [LYS] | 3:55 [U] | BU:92 [LYS] | B5:2469 [U] | ✔ |
U:99 [LYS] | 3:56 [U] | BU:92 [LYS] | B5:2470 [C] | ✔ |
U:100 [LYS] | 3:56 [U] | BU:93 [LYS] | B5:2470 [C] | ✔ |
U:110 [LEU] | 3:51 [G] | BU:103 [VAL] | B5:2465 [G] | ✔ |
U:110 [LEU] | 3:154 [C] | BU:103 [VAL] | B5:2545 [C] | ✔ |
U:117 [TYR] | 3:50 [U] | BU:110 [TYR] | B5:2464 [A] | ✔ |
U:117 [TYR] | 3:51 [G] | BU:110 [TYR] | B5:2465 [G] | ✔ |
U:86 [ARG] | 3:48 [G] | BU:79 [SER] | B5:2462 [G] | ✔ |
U:86 [ARG] | 3:49 [G] | BU:79 [SER] | B5:2463 [G] | ✔ |
U:86 [ARG] | 3:60 [U] | BU:79 [SER] | B5:2474 [U] | ✔ |
U:120 [LYS] | 3:154 [C] | BU:113 [ARG] | B5:2545 [C] | ✔ |
U:120 [LYS] | 3:155 [U] | BU:113 [ARG] | B5:2546 [G] | ✔ |
U:111 [ALA] | 3:50 [U] | BU:104 [ALA] | B5:2464 [A] | ✔ |
U:111 [ALA] | 3:51 [G] | BU:104 [ALA] | B5:2465 [G] | ✔ |
U:96 [LYS] | 3:55 [U] | BU:89 [LYS] | B5:2469 [U] | ✔ |
U:96 [LYS] | 3:58 [C] | BU:89 [LYS] | B5:2472 [C] | ✔ |
U:96 [LYS] | 3:59 [U] | BU:89 [LYS] | B5:2473 [U] | ✔ |
U:26 [PHE] | 3:49 [G] | BU:21 [PHE] | B5:2463 [G] | ✔ |
U:92 [TYR] | 3:53 [G] | BU:85 [TYR] | B5:2467 [G] | ❌ 7O7Y_BU_B5 |
U:85 [TYR] | 3:60 [U] | BU:78 [PHE] | B5:2474 [U] | ❌ 7O7Y_BU_B5 |
U:110 [LEU] | 3:155 [U] | BU:103 [VAL] | B5:2546 [G] | ❌ 7O7Y_BU_B5 |
U:86 [ARG] | 3:61 [U] | BU:79 [SER] | B5:2475 [PSU] | ❌ 7O7Y_BU_B5 |
U:85 [TYR] | 3:49 [G] | BU:78 [PHE] | B5:2463 [G] | ❌ 6AZ3_U_3 |
U:87 [LYS] | 3:48 [G] | BU:80 [LYS] | B5:2462 [G] | ❌ 6AZ3_U_3 |
U:95 [LYS] | 3:61 [U] | BU:88 [LYS] | B5:2475 [PSU] | ❌ 6AZ3_U_3 |
U:88 [LYS] | 3:64 [A] | BU:81 [ARG] | B5:2478 [U] | ❌ 7O7Y_B5:2478 no longer at interface |
U:100 [LYS] | 3:57 [U] | BU:93 [LYS] | B5:2471 [U] | ❌ 7O7Y_B5:2471 no longer at interface |
U:86 [ARG] | 3:47 [C] | BU:79 [SER] | B5:2461 [G] | ❌ 7O7Y_B5:2461 no longer at interface |
U:114 [LYS] | 3:169 [G] | BU:107 [LYS] | B5:2560 [G] | ❌ 6AZ3_U:114, 6AZ3_3:169 no longer at interface |
U:114 [LYS] | 3:168 [U] | BU:107 [LYS] | B5:2559 [C] | ❌ 6AZ3_U:114, 6AZ3_3:168 no longer at interface |
U:60 [ARG] | 3:60 [U] | BU:52 [LYS] | B5:2474 [U] | ❌ 7O7Y_BU:52 no longer at interface |
U:24 [LYS] | 3:48 [G] | BU:19 [LEU] | B5:2462 [G] | ❌ 7O7Y_BU:19 no longer at interface |
U:24 [LYS] | 3:49 [G] | BU:19 [LEU] | B5:2463 [G] | ❌ 7O7Y_BU:19 no longer at interface |
U:61 [LYS] | 3:58 [C] | BU:53 [ALA] | B5:2472 [C] | ❌ 7O7Y_BU:53 no longer at interface |
U:61 [LYS] | 3:59 [U] | BU:53 [ALA] | B5:2473 [U] | ❌ 7O7Y_BU:53 no longer at interface |
U:84 [ALA] | 3:48 [G] | BU:77 [PRO] | B5:2462 [G] | ❌ 7O7Y_BU:77 no longer at interface |
U:114 [LYS] | 3:49 [G] | BU:107 [LYS] | B5:2463 [G] | ❌ 6AZ3_U:114 no longer at interface |
U:114 [LYS] | 3:50 [U] | BU:107 [LYS] | B5:2464 [A] | ❌ 6AZ3_U:114 no longer at interface |
U:116 [THR] | 3:50 [U] | BU:109 [SER] | B5:2464 [A] | ❌ 6AZ3_U:116 no longer at interface |
U:54 [ASN] | 3:58 [C] | BU:46 [ARG] | B5:2472 [C] | ❌ 6AZ3_U:54 no longer at interface |
Properties of this pair
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
---|---|---|---|---|---|---|---|---|---|---|---|---|
Ribosomal protein L22e | 0.85 | 0.92 | 0.59 | 0.93 | 0.85 | 0.89 | 0.9 | 0.86 | 0.83 | 0.48 | 0.68 |
Other pairs involving 6AZ3_U_3 or 7O7Y_BU_B5
Total number of entries: 1
Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
---|---|---|---|---|---|---|---|---|
6AZ3_U_3 | 7O7Y_BU_B5 | 0.86 | 0.85 | 0.92 | 0.59 | Ribosomal protein L22e | compare |