RNAprotDB

All interfaces > All interologs > Interface groups > group24 > 7O7Y_BU_B5

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

7O7Y_BU
7O7Y_B5
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
BU:21 [PHE] B5:2463 [G] 3.99 B5:2479 [U] 53.59
BU:46 [ARG] B5:2472 [C] 3.86 B5:4393 [G] 56.34
BU:48 [LYS] B5:2472 [C] 4.75 B5:4393 [G] 99.0
BU:48 [LYS] B5:2473 [U] 2.33 99.0
BU:48 [LYS] B5:2474 [U] 3.08 99.0
BU:49 [VAL] B5:2474 [U] 4.22 74.91
BU:50 [ASN] B5:2474 [U] 3.4 base:BB 70.74
BU:51 [GLY] B5:2474 [U] 3.04 base:BB 76.77
BU:78 [PHE] B5:2462 [G] 4.71 B5:2480 [U] 49.86
BU:78 [PHE] B5:2463 [G] 4.12 B5:2479 [U] 49.86
BU:79 [SER] B5:2462 [G] 3.36 B5:2480 [U] 79.21
BU:79 [SER] B5:2463 [G] 3.22 B5:2479 [U] 79.21
BU:79 [SER] B5:2474 [U] 4.72 79.21
BU:80 [LYS] B5:2462 [G] 4.83 B5:2480 [U] 89.98
BU:80 [LYS] B5:2463 [G] 2.82 B5:2479 [U] 89.98
BU:80 [LYS] B5:2464 [A] 2.64 B5:2478 [U] 89.98
BU:81 [ARG] B5:2463 [G] 3.91 B5:2479 [U] 80.68
BU:81 [ARG] B5:2464 [A] 3.49 B5:2478 [U] base:SC 80.68
BU:81 [ARG] B5:2465 [G] 3.01 B5:2477 [C] base:SC 80.68
BU:81 [ARG] B5:2466 [A] 3.6 B5:2476 [U] 80.68
BU:81 [ARG] B5:2475 [PSU] 4.12 B5:2467 [G] 80.68
BU:81 [ARG] B5:2476 [U] 3.54 B5:2466 [A] base:SC 80.68
BU:81 [ARG] B5:2477 [C] 3.74 B5:2465 [G] 80.68
BU:82 [TYR] B5:2474 [U] 3.17 base/AA stacks 75.3
BU:84 [LYS] B5:2464 [A] 4.73 B5:2478 [U] 90.58
BU:84 [LYS] B5:2465 [G] 2.49 B5:2477 [C] 90.58
BU:84 [LYS] B5:2466 [A] 4.05 B5:2476 [U] 90.58
BU:85 [TYR] B5:2473 [U] 3.13 63.02
BU:85 [TYR] B5:2474 [U] 4.04 63.02
BU:85 [TYR] B5:2475 [PSU] 3.44 B5:2467 [G] base/AA stacks 63.02
BU:88 [LYS] B5:2466 [A] 3.82 B5:2476 [U] 81.77
BU:88 [LYS] B5:2467 [G] 3.9 B5:2475 [PSU] base:SC 81.77
BU:88 [LYS] B5:2468 [U] 3.84 81.77
BU:88 [LYS] B5:2469 [U] 3.68 81.77
BU:88 [LYS] B5:2475 [PSU] 4.66 B5:2467 [G] 81.77
BU:89 [LYS] B5:2469 [U] 2.97 base:SC 70.66
BU:89 [LYS] B5:2472 [C] 4.75 B5:4393 [G] 70.66
BU:89 [LYS] B5:2473 [U] 2.68 base:SC 70.66
BU:92 [LYS] B5:2469 [U] 3.64 64.61
BU:92 [LYS] B5:2470 [C] 2.31 B5:4395 [G] 64.61
BU:93 [LYS] B5:2470 [C] 4.74 B5:4395 [G] 73.96
BU:97 [ARG] B5:2467 [G] 3.59 B5:2475 [PSU] 75.74
BU:97 [ARG] B5:2468 [U] 3.23 base:SC 75.74
BU:97 [ARG] B5:2469 [U] 2.6 base:SC 75.74
BU:101 [ARG] B5:2465 [G] 3.2 B5:2477 [C] 84.27
BU:101 [ARG] B5:2466 [A] 2.91 B5:2476 [U] 84.27
BU:101 [ARG] B5:2544 [U] 4.37 B5:2558 [G] 84.27
BU:101 [ARG] B5:2545 [C] 2.33 B5:2557 [G] 84.27
BU:101 [ARG] B5:2546 [G] 3.84 B5:2556 [C] 84.27
BU:102 [VAL] B5:2465 [G] 4.43 B5:2477 [C] 78.4
BU:102 [VAL] B5:2466 [A] 4.32 B5:2476 [U] 78.4
BU:103 [VAL] B5:2465 [G] 3.7 B5:2477 [C] 73.04
BU:103 [VAL] B5:2545 [C] 3.74 B5:2557 [G] 73.04
BU:104 [ALA] B5:2464 [A] 3.36 B5:2478 [U] 77.07
BU:104 [ALA] B5:2465 [G] 3.0 B5:2477 [C] 77.07
BU:106 [SER] B5:2464 [A] 4.12 B5:2478 [U] 49.51
BU:107 [LYS] B5:2463 [G] 4.97 B5:2479 [U] 66.93
BU:107 [LYS] B5:2464 [A] 4.37 B5:2478 [U] 66.93
BU:107 [LYS] B5:2559 [C] 3.49 B5:2543 [G] 66.93
BU:107 [LYS] B5:2560 [G] 3.26 B5:2542 [C] 66.93
BU:109 [SER] B5:2464 [A] 4.93 B5:2478 [U] 41.19
BU:110 [TYR] B5:2464 [A] 2.7 B5:2478 [U] 70.96
BU:110 [TYR] B5:2465 [G] 4.17 B5:2477 [C] 70.96
BU:113 [ARG] B5:2545 [C] 2.79 B5:2557 [G] sugar:SC 52.96
BU:113 [ARG] B5:2546 [G] 2.69 B5:2556 [C] 52.96

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group24 7O7Y_BU_B5 BU: Ribosomal protein el22, Oryctolagus cuniculus (natural) B5: 28s rRNA, Oryctolagus cuniculus (natural) Ribosomal protein L22e Eukaryotic large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 1

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_U_3 7O7Y_BU_B5 0.86 0.85 0.92 0.59 Ribosomal protein L22e compare