RNAprotDB

Contacts -

6AZ3_a	6AZ3_1	Distance	Base Pair	Hbond nuc:res	Base Stacking	Residue conservation
a:78 [LYS]	1:128 [U]	4.92	1:137 [G]			73.0
a:81 [CYS]	1:15 [G]	4.35	7:153 [C]			52.1
a:81 [CYS]	1:16 [G]	3.95	7:152 [C]			52.1
a:85 [LYS]	1:16 [G]	4.25	7:152 [C]			46.7
a:85 [LYS]	1:17 [C]	3.94	7:151 [G]			46.7
a:88 [ARG]	1:15 [G]	4.89	7:153 [C]			92.3
a:88 [ARG]	1:16 [G]	2.54	7:152 [C]			92.3
a:93 [HIS]	1:17 [C]	4.99	7:151 [G]			84.9
a:93 [HIS]	1:18 [A]	3.14	7:150 [U]			84.9
a:93 [HIS]	1:19 [G]	4.96	7:149 [A]			84.9
a:94 [ARG]	1:56 [G]	3.47	1:25 [C]			92.8
a:94 [ARG]	1:57 [G]	2.76	1:24 [A]			92.8
a:97 [LEU]	1:17 [C]	3.58	7:151 [G]			73.6
a:97 [LEU]	1:18 [A]	3.33	7:150 [U]			73.6
a:101 [GLU]	1:170 [U]	4.66				3.8
a:101 [GLU]	1:172 [G]	4.9	1:285 [C]			3.8
a:101 [GLU]	1:276 [C]	4.57	1:179 [G]			3.8
a:102 [ASN]	1:134 [A]	4.67	1:130 [U]			25.2
a:102 [ASN]	1:135 [A]	2.94				25.2
a:102 [ASN]	1:171 [U]	4.44	1:286 [U]			25.2
a:102 [ASN]	1:172 [G]	3.27	1:285 [C]			25.2
a:105 [ASN]	1:135 [A]	2.7		base:BB		38.4
a:105 [ASN]	1:170 [U]	3.52			base/AA stacks	38.4
a:106 [ARG]	1:135 [A]	3.42			base/AA stacks	1.9
a:107 [LYS]	1:135 [A]	2.99		base:BB		43.6
a:107 [LYS]	1:170 [U]	3.68		base:SC		43.6
a:108 [THR]	1:112 [U]	3.93	1:357 [A]			77.1
a:108 [THR]	1:113 [C]	3.51	1:304 [G]			77.1
a:108 [THR]	1:150 [G]	3.87	1:118 [C]			77.1
a:109 [SER]	1:150 [G]	3.79	1:118 [C]			1.5
a:109 [SER]	1:151 [C]	3.28	1:117 [G]			1.5
a:109 [SER]	1:290 [G]	4.96	1:165 [C]			1.5
a:110 [ARG]	1:112 [U]	3.58	1:357 [A]			65.1
a:110 [ARG]	1:151 [C]	3.97	1:117 [G]			65.1
a:110 [ARG]	1:152 [A]	3.76	1:116 [U]			65.1
a:110 [ARG]	1:153 [C]	3.46	1:115 [U]			65.1
a:111 [GLN]	1:111 [C]	2.99	1:358 [G]	sugar:SC		38.7
a:111 [GLN]	1:112 [U]	3.33	1:357 [A]			38.7
a:112 [MET]	1:135 [A]	3.52				4.0
a:112 [MET]	1:288 [A]	4.38	1:167 [U]			4.0
a:113 [ARG]	1:150 [G]	4.78	1:118 [C]			68.1
a:113 [ARG]	1:151 [C]	2.66	1:117 [G]			68.1
a:113 [ARG]	1:152 [A]	3.77	1:116 [U]			68.1
a:113 [ARG]	1:290 [G]	3.51	1:165 [C]			68.1
a:115 [ALA]	1:280 [A]	4.99				6.9
a:116 [HIS]	1:168 [G]	4.77	1:287 [C]			0.0
a:116 [HIS]	1:289 [U]	4.63	1:166 [G]			0.0
a:116 [HIS]	1:290 [G]	3.4	1:165 [C]			0.0
a:117 [LYS]	1:290 [G]	3.78	1:165 [C]			54.7
a:117 [LYS]	1:291 [A]	4.48	1:164 [U]			54.7
a:119 [PRO]	1:280 [A]	4.31				66.8
a:120 [LYS]	1:108 [G]	3.34				4.0
a:121 [ARG]	1:108 [G]	3.2		base:BB		84.1
a:123 [TYR]	1:108 [G]	3.7				48.7

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

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