Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
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InterfaceRNA
Protein
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Show chains
Interface
show interface as licoriceCommon contacts -
6AZ3_a
|
6AZ3_1
|
7O7Y_Bh
|
7O7Y_B5
|
Conserved?
|
---|---|---|---|---|
a:108 [THR] | 1:150 [G] | Bh:104 [THR] | B5:154 [G] | ✔ |
a:93 [HIS] | 1:18 [A] | Bh:89 [ARG] | B5:19 [G] | ✔ |
a:93 [HIS] | 1:19 [G] | Bh:89 [ARG] | B5:20 [U] | ✔ |
a:88 [ARG] | 1:15 [G] | Bh:84 [ARG] | B5:16 [G] | ✔ |
a:88 [ARG] | 1:16 [G] | Bh:84 [ARG] | B5:17 [A] | ✔ |
a:113 [ARG] | 1:151 [C] | Bh:109 [ARG] | B5:155 [C] | ✔ |
a:113 [ARG] | 1:152 [A] | Bh:109 [ARG] | B5:156 [G] | ✔ |
a:113 [ARG] | 1:290 [G] | Bh:109 [ARG] | B5:266 [C] | ✔ |
a:117 [LYS] | 1:290 [G] | Bh:113 [LEU] | B5:266 [C] | ✔ |
a:117 [LYS] | 1:291 [A] | Bh:113 [LEU] | B5:267 [G] | ✔ |
a:109 [SER] | 1:150 [G] | Bh:105 [LYS] | B5:154 [G] | ✔ |
a:109 [SER] | 1:151 [C] | Bh:105 [LYS] | B5:155 [C] | ✔ |
a:116 [HIS] | 1:168 [G] | Bh:112 [ARG] | B5:173 [C] | ✔ |
a:116 [HIS] | 1:290 [G] | Bh:112 [ARG] | B5:266 [C] | ✔ |
a:102 [ASN] | 1:134 [A] | Bh:98 [HIS] | B5:137 [G] | ✔ |
a:102 [ASN] | 1:135 [A] | Bh:98 [HIS] | B5:138 [G] | ✔ |
a:110 [ARG] | 1:112 [U] | Bh:106 [LYS] | B5:111 [C] | ✔ |
a:110 [ARG] | 1:151 [C] | Bh:106 [LYS] | B5:155 [C] | ✔ |
a:110 [ARG] | 1:152 [A] | Bh:106 [LYS] | B5:156 [G] | ✔ |
a:110 [ARG] | 1:153 [C] | Bh:106 [LYS] | B5:157 [U] | ✔ |
a:81 [CYS] | 1:15 [G] | Bh:78 [TYR] | B5:16 [G] | ✔ |
a:81 [CYS] | 1:16 [G] | Bh:78 [TYR] | B5:17 [A] | ✔ |
a:97 [LEU] | 1:17 [C] | Bh:93 [ARG] | B5:18 [C] | ✔ |
a:97 [LEU] | 1:18 [A] | Bh:93 [ARG] | B5:19 [G] | ✔ |
a:107 [LYS] | 1:170 [U] | Bh:103 [LYS] | B5:174 [C] | ✔ |
a:108 [THR] | 1:112 [U] | Bh:104 [THR] | B5:111 [C] | ❌ 7O7Y_Bh_B5 |
a:108 [THR] | 1:113 [C] | Bh:104 [THR] | B5:112 [C] | ❌ 7O7Y_Bh_B5 |
a:93 [HIS] | 1:17 [C] | Bh:89 [ARG] | B5:18 [C] | ❌ 7O7Y_Bh_B5 |
a:113 [ARG] | 1:150 [G] | Bh:109 [ARG] | B5:154 [G] | ❌ 7O7Y_Bh_B5 |
a:112 [MET] | 1:135 [A] | Bh:108 [GLN] | B5:138 [G] | ❌ 7O7Y_Bh_B5 |
a:112 [MET] | 1:288 [A] | Bh:108 [GLN] | B5:264 [C] | ❌ 7O7Y_Bh_B5 |
a:101 [GLU] | 1:170 [U] | Bh:97 [LYS] | B5:174 [C] | ❌ 7O7Y_Bh_B5 |
a:101 [GLU] | 1:172 [G] | Bh:97 [LYS] | B5:176 [G] | ❌ 7O7Y_Bh_B5 |
a:105 [ASN] | 1:135 [A] | Bh:101 [SER] | B5:138 [G] | ❌ 7O7Y_Bh_B5 |
a:105 [ASN] | 1:170 [U] | Bh:101 [SER] | B5:174 [C] | ❌ 7O7Y_Bh_B5 |
a:109 [SER] | 1:290 [G] | Bh:105 [LYS] | B5:266 [C] | ❌ 7O7Y_Bh_B5 |
a:116 [HIS] | 1:289 [U] | Bh:112 [ARG] | B5:265 [C] | ❌ 7O7Y_Bh_B5 |
a:102 [ASN] | 1:171 [U] | Bh:98 [HIS] | B5:175 [C] | ❌ 7O7Y_Bh_B5 |
a:102 [ASN] | 1:172 [G] | Bh:98 [HIS] | B5:176 [G] | ❌ 7O7Y_Bh_B5 |
a:107 [LYS] | 1:135 [A] | Bh:103 [LYS] | B5:138 [G] | ❌ 7O7Y_Bh_B5 |
a:105 [ASN] | 1:171 [U] | Bh:101 [SER] | B5:175 [C] | ❌ 6AZ3_a_1 |
a:105 [ASN] | 1:172 [G] | Bh:101 [SER] | B5:176 [G] | ❌ 6AZ3_a_1 |
a:107 [LYS] | 1:171 [U] | Bh:103 [LYS] | B5:175 [C] | ❌ 6AZ3_a_1 |
a:109 [SER] | 1:289 [U] | Bh:105 [LYS] | B5:265 [C] | ❌ 6AZ3_a_1 |
a:110 [ARG] | 1:150 [G] | Bh:106 [LYS] | B5:154 [G] | ❌ 6AZ3_a_1 |
a:110 [ARG] | 1:113 [C] | Bh:106 [LYS] | B5:112 [C] | ❌ 6AZ3_a_1 |
a:112 [MET] | 1:168 [G] | Bh:108 [GLN] | B5:173 [C] | ❌ 6AZ3_a_1 |
a:113 [ARG] | 1:291 [A] | Bh:109 [ARG] | B5:267 [G] | ❌ 6AZ3_a_1 |
a:115 [ALA] | 1:168 [G] | Bh:111 [GLU] | B5:173 [C] | ❌ 6AZ3_a_1 |
a:115 [ALA] | 1:170 [U] | Bh:111 [GLU] | B5:174 [C] | ❌ 6AZ3_a_1 |
a:116 [HIS] | 1:288 [A] | Bh:112 [ARG] | B5:264 [C] | ❌ 6AZ3_a_1 |
a:94 [ARG] | 1:56 [G] | Bh:90 [ALA] | B5:57 [G] | ❌ 7O7Y_Bh:90, 7O7Y_B5:57 no longer at interface |
a:94 [ARG] | 1:57 [G] | Bh:90 [ALA] | B5:58 [G] | ❌ 7O7Y_Bh:90, 7O7Y_B5:58 no longer at interface |
a:101 [GLU] | 1:276 [C] | Bh:97 [LYS] | B5:254 [G] | ❌ 7O7Y_B5:254 no longer at interface |
a:113 [ARG] | 1:292 [A] | Bh:109 [ARG] | B5:268 [G] | ❌ 6AZ3_1:292 no longer at interface |
a:116 [HIS] | 1:287 [C] | Bh:112 [ARG] | B5:263 [G] | ❌ 6AZ3_1:287 no longer at interface |
a:116 [HIS] | 1:167 [U] | Bh:112 [ARG] | B5:172 [C] | ❌ 6AZ3_1:167 no longer at interface |
a:118 [PHE] | 1:292 [A] | Bh:114 [TYR] | B5:268 [G] | ❌ 6AZ3_a:118, 6AZ3_1:292 no longer at interface |
a:75 [ALA] | 1:133 [C] | Bh:74 [LYS] | B5:136 [U] | ❌ 6AZ3_a:75, 6AZ3_1:133 no longer at interface |
a:76 [ASP] | 1:132 [A] | Bh:75 [GLY] | B5:132 [G] | ❌ 6AZ3_a:76, 6AZ3_1:132 no longer at interface |
a:79 [LEU] | 1:133 [C] | Bh:76 [LYS] | B5:136 [U] | ❌ 6AZ3_a:79, 6AZ3_1:133 no longer at interface |
a:80 [ARG] | 1:127 [G] | Bh:77 [LYS] | B5:126 [C] | ❌ 6AZ3_a:80, 6AZ3_1:127 no longer at interface |
a:80 [ARG] | 1:133 [C] | Bh:77 [LYS] | B5:136 [U] | ❌ 6AZ3_a:80, 6AZ3_1:133 no longer at interface |
a:81 [CYS] | 1:126 [G] | Bh:78 [TYR] | B5:125 [C] | ❌ 6AZ3_1:126 no longer at interface |
a:81 [CYS] | 1:127 [G] | Bh:78 [TYR] | B5:126 [C] | ❌ 6AZ3_1:127 no longer at interface |
a:83 [THR] | 1:133 [C] | Bh:79 [LYS] | B5:136 [U] | ❌ 6AZ3_a:83, 6AZ3_1:133 no longer at interface |
a:100 [LYS] | 1:133 [C] | Bh:96 [ASN] | B5:136 [U] | ❌ 6AZ3_a:100, 6AZ3_1:133 no longer at interface |
a:106 [ARG] | 1:135 [A] | Bh:102 [LEU] | B5:138 [G] | ❌ 7O7Y_Bh:102 no longer at interface |
a:85 [LYS] | 1:16 [G] | Bh:81 [LEU] | B5:17 [A] | ❌ 7O7Y_Bh:81 no longer at interface |
a:85 [LYS] | 1:17 [C] | Bh:81 [LEU] | B5:18 [C] | ❌ 7O7Y_Bh:81 no longer at interface |
a:111 [GLN] | 1:111 [C] | Bh:107 [GLN] | B5:110 [C] | ❌ 7O7Y_Bh:107 no longer at interface |
a:111 [GLN] | 1:112 [U] | Bh:107 [GLN] | B5:111 [C] | ❌ 7O7Y_Bh:107 no longer at interface |
a:114 [GLN] | 1:112 [U] | Bh:110 [LYS] | B5:111 [C] | ❌ 6AZ3_a:114 no longer at interface |
a:114 [GLN] | 1:111 [C] | Bh:110 [LYS] | B5:110 [C] | ❌ 6AZ3_a:114 no longer at interface |
a:118 [PHE] | 1:291 [A] | Bh:114 [TYR] | B5:267 [G] | ❌ 6AZ3_a:118 no longer at interface |
a:100 [LYS] | 1:134 [A] | Bh:96 [ASN] | B5:137 [G] | ❌ 6AZ3_a:100 no longer at interface |
a:103 [GLU] | 1:134 [A] | Bh:99 [GLU] | B5:137 [G] | ❌ 6AZ3_a:103 no longer at interface |
Properties of this pair
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
---|---|---|---|---|---|---|---|---|---|---|---|---|
Ribosomal protein L29 (L29p) | Eukaryotic large subunit ribosomal RNA | 0.92 | 1.44 | 0.16 | 0.93 | 0.91 | 0.64 | 0.79 | 0.42 | 0.15 | 0.10 | 0.50 |
Other pairs involving 6AZ3_a_1 or 7O7Y_Bh_B5
Total number of entries: 1