Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
Protein
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 7O7Y_Bh
|
7O7Y_B5
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| Bh:70 [ARG] | B5:134 [G] | 3.21 | base/AA stacks | 0.0 | ||
| Bh:74 [LYS] | B5:133 [C] | 3.01 | 0.0 | |||
| Bh:74 [LYS] | B5:136 [U] | 4.09 | 0.0 | |||
| Bh:75 [GLY] | B5:132 [G] | 4.55 | 0.0 | |||
| Bh:75 [GLY] | B5:133 [C] | 4.38 | 0.0 | |||
| Bh:76 [LYS] | B5:136 [U] | 3.48 | 0.0 | |||
| Bh:77 [LYS] | B5:126 [C] | 4.47 | B5:142 [G] | 0.0 | ||
| Bh:77 [LYS] | B5:136 [U] | 4.16 | 0.0 | |||
| Bh:78 [TYR] | B5:16 [G] | 3.27 | B8:141 [C] | 0.0 | ||
| Bh:78 [TYR] | B5:17 [A] | 3.93 | B8:140 [C] | 0.0 | ||
| Bh:78 [TYR] | B5:125 [C] | 4.8 | B5:144 [G] | 0.0 | ||
| Bh:78 [TYR] | B5:126 [C] | 2.57 | B5:142 [G] | 0.0 | ||
| Bh:79 [LYS] | B5:133 [C] | 4.77 | 0.0 | |||
| Bh:79 [LYS] | B5:136 [U] | 2.28 | base:SC | 0.0 | ||
| Bh:84 [ARG] | B5:16 [G] | 4.83 | B8:141 [C] | 0.0 | ||
| Bh:84 [ARG] | B5:17 [A] | 2.67 | B8:140 [C] | 0.0 | ||
| Bh:84 [ARG] | B5:134 [G] | 4.35 | 0.0 | |||
| Bh:85 [PRO] | B5:134 [G] | 4.0 | 0.0 | |||
| Bh:85 [PRO] | B5:135 [G] | 4.29 | 0.0 | |||
| Bh:86 [LYS] | B5:134 [G] | 4.56 | 0.0 | |||
| Bh:87 [LYS] | B5:135 [G] | 4.24 | 0.0 | |||
| Bh:89 [ARG] | B5:19 [G] | 3.03 | B8:138 [C] | 0.0 | ||
| Bh:89 [ARG] | B5:20 [U] | 3.31 | 0.0 | |||
| Bh:93 [ARG] | B5:18 [C] | 3.85 | B8:139 [G] | 0.0 | ||
| Bh:93 [ARG] | B5:19 [G] | 2.6 | B8:138 [C] | 0.0 | ||
| Bh:94 [ARG] | B5:135 [G] | 3.91 | base/AA stacks | 0.0 | ||
| Bh:95 [LEU] | B5:135 [G] | 2.46 | base:BB | 0.0 | ||
| Bh:96 [ASN] | B5:135 [G] | 3.32 | 0.0 | |||
| Bh:96 [ASN] | B5:136 [U] | 3.71 | 0.0 | |||
| Bh:96 [ASN] | B5:137 [G] | 3.59 | B5:131 [C] | 0.0 | ||
| Bh:97 [LYS] | B5:135 [G] | 3.32 | 0.0 | |||
| Bh:98 [HIS] | B5:137 [G] | 3.29 | B5:131 [C] | 0.0 | ||
| Bh:98 [HIS] | B5:138 [G] | 3.29 | B5:130 [C] | 0.0 | ||
| Bh:99 [GLU] | B5:137 [G] | 4.51 | B5:131 [C] | 0.0 | ||
| Bh:100 [GLU] | B5:135 [G] | 2.92 | base:SC | 0.0 | ||
| Bh:101 [SER] | B5:175 [C] | 4.34 | B5:261 [G] | 0.0 | ||
| Bh:101 [SER] | B5:176 [G] | 4.38 | B5:260 [C] | 0.0 | ||
| Bh:103 [LYS] | B5:174 [C] | 4.07 | B5:262 [G] | 0.0 | ||
| Bh:103 [LYS] | B5:175 [C] | 4.04 | B5:261 [G] | 0.0 | ||
| Bh:104 [THR] | B5:154 [G] | 4.69 | B5:117 [C] | 0.0 | ||
| Bh:105 [LYS] | B5:154 [G] | 3.21 | B5:117 [C] | sugar:SC | 0.0 | |
| Bh:105 [LYS] | B5:155 [C] | 3.57 | B5:116 [G] | 0.0 | ||
| Bh:105 [LYS] | B5:265 [C] | 4.78 | 0.0 | |||
| Bh:106 [LYS] | B5:111 [C] | 3.43 | B5:330 [G] | 0.0 | ||
| Bh:106 [LYS] | B5:112 [C] | 3.34 | B5:278 [G] | 0.0 | ||
| Bh:106 [LYS] | B5:154 [G] | 4.91 | B5:117 [C] | 0.0 | ||
| Bh:106 [LYS] | B5:155 [C] | 3.34 | B5:116 [G] | 0.0 | ||
| Bh:106 [LYS] | B5:156 [G] | 3.2 | B5:114 [G] | 0.0 | ||
| Bh:106 [LYS] | B5:157 [U] | 4.2 | B5:113 [A] | 0.0 | ||
| Bh:108 [GLN] | B5:173 [C] | 4.81 | B5:263 [G] | 0.0 | ||
| Bh:109 [ARG] | B5:155 [C] | 4.87 | B5:116 [G] | 0.0 | ||
| Bh:109 [ARG] | B5:156 [G] | 3.24 | B5:114 [G] | 0.0 | ||
| Bh:109 [ARG] | B5:266 [C] | 4.85 | 0.0 | |||
| Bh:109 [ARG] | B5:267 [G] | 2.94 | B5:168 [C] | 0.0 | ||
| Bh:109 [ARG] | B5:268 [G] | 4.93 | B5:167 [C] | 0.0 | ||
| Bh:110 [LYS] | B5:110 [C] | 3.02 | B5:331 [G] | 0.0 | ||
| Bh:110 [LYS] | B5:111 [C] | 3.01 | B5:330 [G] | 0.0 | ||
| Bh:111 [GLU] | B5:173 [C] | 4.53 | B5:263 [G] | 0.0 | ||
| Bh:111 [GLU] | B5:174 [C] | 4.33 | B5:262 [G] | 0.0 | ||
| Bh:112 [ARG] | B5:172 [C] | 2.43 | B5:264 [C] | base:SC, base:SC, base:SC | 0.0 | |
| Bh:112 [ARG] | B5:173 [C] | 2.95 | B5:263 [G] | base/AA stacks | 0.0 | |
| Bh:112 [ARG] | B5:263 [G] | 4.62 | B5:173 [C] | 0.0 | ||
| Bh:112 [ARG] | B5:264 [C] | 2.68 | B5:172 [C] | base:SC | 0.0 | |
| Bh:112 [ARG] | B5:266 [C] | 3.11 | base/AA stacks | 0.0 | ||
| Bh:113 [LEU] | B5:266 [C] | 4.32 | 0.0 | |||
| Bh:113 [LEU] | B5:267 [G] | 3.75 | B5:168 [C] | 0.0 | ||
| Bh:114 [TYR] | B5:267 [G] | 4.67 | B5:168 [C] | 0.0 | ||
| Bh:114 [TYR] | B5:268 [G] | 3.51 | B5:167 [C] | 0.0 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group25 | 7O7Y_Bh_B5 | Bh: Ul29, Oryctolagus cuniculus (natural) B5: 28s rRNA, Oryctolagus cuniculus (natural) | G1SIT5 | Ribosomal protein L29 (L29p) | Eukaryotic large subunit ribosomal RNA | ✔ |
|
Interologs
Total number of interologs for this interface: 1