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All interfaces > All interologs > Interface groups > group26 > 6AZ3_j_7

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Licorice
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RNA

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Licorice
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Chain
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Hydrophobicity
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Conservation*

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Rim - Core

Contacts -

6AZ3_j
6AZ3_7
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
j:14 [ARG] 7:110 [A] 3.66 45.8
j:17 [ILE] 7:110 [A] 3.35 67.6
j:19 [CYS] 7:43 [A2M] 4.28 7:100 [U] 98.3
j:20 [ARG] 7:42 [G] 4.76 7:101 [U] 75.8
j:20 [ARG] 7:43 [A2M] 3.88 7:100 [U] 75.8
j:20 [ARG] 7:101 [U] 3.76 7:42 [G] sugar:BB 75.8
j:20 [ARG] 7:102 [G] 4.32 7:41 [A] 75.8
j:20 [ARG] 7:109 [A] 3.41 base/AA stacks 75.8
j:20 [ARG] 7:110 [A] 3.33 75.8
j:20 [ARG] 7:111 [C] 3.85 7:108 [A] 75.8
j:21 [ARG] 7:42 [G] 3.91 7:101 [U] base:BB 99.0
j:21 [ARG] 7:43 [A2M] 3.88 7:100 [U] 99.0
j:21 [ARG] 7:102 [G] 3.23 7:41 [A] 99.0
j:21 [ARG] 7:103 [A] 2.66 7:39 [G] 99.0
j:22 [CYS] 7:42 [G] 4.92 7:101 [U] 81.6
j:22 [CYS] 7:43 [A2M] 3.93 7:100 [U] 81.6
j:23 [GLY] 7:43 [A2M] 3.25 7:100 [U] 90.5
j:23 [GLY] 7:44 [A] 4.51 7:99 [U] 90.5
j:27 [TYR] 7:110 [A] 4.26 42.8
j:29 [VAL] 7:110 [A] 4.78 28.6
j:39 [TYR] 7:102 [G] 3.55 7:41 [A] 52.6
j:39 [TYR] 7:103 [A] 3.21 7:39 [G] 52.6
j:39 [TYR] 7:109 [A] 4.07 52.6
j:40 [PRO] 7:103 [A] 4.84 7:39 [G] 64.9
j:41 [ARG] 7:103 [A] 4.13 7:39 [G] 38.4
j:42 [ALA] 7:103 [A] 3.36 7:39 [G] 52.8
j:42 [ALA] 7:104 [A] 4.19 7:40 [A] 52.8
j:44 [ARG] 7:41 [A] 3.53 7:102 [G] base:SC 12.1
j:44 [ARG] 7:42 [G] 3.69 7:101 [U] 12.1
j:44 [ARG] 7:102 [G] 4.22 7:41 [A] 12.1
j:57 [ARG] 7:42 [G] 4.75 7:101 [U] 53.7
j:58 [ARG] 7:41 [A] 4.33 7:102 [G] 73.3
j:58 [ARG] 7:42 [G] 3.42 7:101 [U] 73.3
j:59 [THR] 7:41 [A] 2.62 7:102 [G] sugar:SC 65.1
j:59 [THR] 7:42 [G] 3.82 7:101 [U] 65.1
j:60 [GLY] 7:41 [A] 3.89 7:102 [G] 62.1
j:60 [GLY] 7:42 [G] 2.94 7:101 [U] 62.1
j:61 [THR] 7:42 [G] 3.53 7:101 [U] 79.9
j:61 [THR] 7:43 [A2M] 4.85 7:100 [U] 79.9
j:62 [GLY] 7:42 [G] 2.8 7:101 [U] 77.9
j:62 [GLY] 7:43 [A2M] 3.64 7:100 [U] 77.9
j:63 [ARG] 7:42 [G] 3.51 7:101 [U] 77.7
j:63 [ARG] 7:43 [A2M] 4.61 7:100 [U] 77.7
j:63 [ARG] 7:44 [A] 4.02 7:99 [U] 77.7
j:63 [ARG] 7:45 [C] 4.88 7:58 [G] 77.7
j:63 [ARG] 7:57 [C] 3.37 7:46 [G] base/AA stacks 77.7
j:63 [ARG] 7:58 [G] 2.35 7:45 [C] base:SC, base:SC 77.7
j:63 [ARG] 7:99 [U] 4.51 7:44 [A] 77.7
j:64 [CYS] 7:41 [A] 3.55 7:102 [G] 66.2
j:64 [CYS] 7:42 [G] 2.9 7:101 [U] 66.2
j:65 [ARG] 7:41 [A] 3.43 7:102 [G] 67.2
j:65 [ARG] 7:42 [G] 4.84 7:101 [U] 67.2
j:65 [ARG] 7:43 [A2M] 4.3 7:100 [U] 67.2
j:65 [ARG] 7:44 [A] 4.1 7:99 [U] 67.2
j:65 [ARG] 7:58 [G] 3.5 7:45 [C] base/AA stacks 67.2
j:65 [ARG] 7:98 [C] 3.08 sugar:SC 67.2
j:65 [ARG] 7:99 [U] 2.4 7:44 [A] base:SC 67.2
j:65 [ARG] 7:100 [U] 3.97 7:43 [A2M] 67.2
j:66 [TYR] 7:35 [C] 3.52 64.0
j:66 [TYR] 7:36 [G] 2.76 64.0
j:66 [TYR] 7:40 [A] 3.53 7:104 [A] 64.0
j:66 [TYR] 7:41 [A] 2.92 7:102 [G] 64.0
j:67 [LEU] 7:35 [C] 3.44 61.6
j:67 [LEU] 7:40 [A] 4.48 7:104 [A] 61.6
j:67 [LEU] 7:41 [A] 2.98 7:102 [G] 61.6
j:68 [LYS] 7:56 [G] 3.72 7:47 [C] 62.4
j:68 [LYS] 7:57 [C] 2.94 7:46 [G] 62.4
j:70 [VAL] 7:35 [C] 4.3 64.0
j:70 [VAL] 7:36 [G] 4.47 64.0
j:72 [ARG] 7:93 [C] 4.44 7:65 [G] 65.1
j:72 [ARG] 7:94 [G] 2.43 65.1
j:73 [ARG] 7:93 [C] 4.96 7:65 [G] 58.4
j:73 [ARG] 7:94 [G] 3.02 58.4
j:73 [ARG] 7:95 [A] 4.37 7:64 [U] 58.4
j:74 [ILE] 7:33 [U] 3.53 1:370 [G] 56.1
j:74 [ILE] 7:34 [U] 3.9 1:369 [A] 56.1
j:74 [ILE] 7:35 [C] 3.65 56.1
j:76 [ASN] 7:93 [C] 3.19 7:65 [G] 59.7
j:76 [ASN] 7:94 [G] 3.33 59.7
j:77 [HIS] 7:32 [U] 3.66 base/AA stacks 44.9
j:77 [HIS] 7:33 [U] 4.81 1:370 [G] 44.9
j:79 [LYS] 7:93 [C] 3.74 7:65 [G] 67.3
j:79 [LYS] 7:94 [G] 3.27 67.3
j:79 [LYS] 7:95 [A] 4.19 7:64 [U] 67.3
j:80 [THR] 7:94 [G] 3.47 29.0
j:80 [THR] 7:95 [A] 3.7 7:64 [U] 29.0
j:81 [PRO] 7:94 [G] 3.57 61.9
j:81 [PRO] 7:95 [A] 4.17 7:64 [U] 61.9

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group26 6AZ3_j_7 j: 60s ribosomal protein l37, Leishmania donovani (natural) 7: rRNA 5.8s, Leishmania donovani (natural) P62885 Rubredoxin-related 5.8S ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 1

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_j_7 7O7Y_Bj_B8 0.90 0.91 1.18 0.51 Rubredoxin-related 5.8S ribosomal RNA compare