Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 7K00_U
|
7K00_A
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| U:31 [GLU] | A:718 [A] | 2.69 | sugar:SC | 79.3 | ||
| U:34 [ARG] | A:718 [A] | 4.06 | 58.0 | |||
| U:34 [ARG] | A:719 [C] | 5.0 | 58.0 | |||
| U:35 [ARG] | A:718 [A] | 3.25 | sugar:SC | 79.39 | ||
| U:38 [TYR] | A:1525 [G] | 2.77 | A:1510 [C] | 82.14 | ||
| U:40 [LYS] | A:1525 [G] | 3.21 | A:1510 [C] | 94.8 | ||
| U:40 [LYS] | A:1526 [G] | 2.51 | A:1509 [C] | base:SC | 94.8 | |
| U:40 [LYS] | A:1527 [U] | 4.8 | A:1508 [A] | 94.8 | ||
| U:41 [PRO] | A:1525 [G] | 4.56 | A:1510 [C] | 98.16 | ||
| U:41 [PRO] | A:1526 [G] | 3.25 | A:1509 [C] | 98.16 | ||
| U:42 [THR] | A:1526 [G] | 3.27 | A:1509 [C] | 99.0 | ||
| U:42 [THR] | A:1527 [U] | 2.68 | A:1508 [A] | 99.0 | ||
| U:42 [THR] | A:1528 [U] | 4.97 | A:1507 [A] | 99.0 | ||
| U:45 [ARG] | A:1526 [G] | 2.81 | A:1509 [C] | 80.28 | ||
| U:45 [ARG] | A:1527 [U] | 3.29 | A:1508 [A] | 80.28 | ||
| U:46 [LYS] | A:1507 [A] | 3.56 | A:1528 [U] | 89.28 | ||
| U:46 [LYS] | A:1528 [U] | 3.63 | A:1507 [A] | 89.28 | ||
| U:46 [LYS] | A:1530 [G] | 2.36 | base:SC, base:SC | 89.28 | ||
| U:48 [ALA] | A:723 [U] | 4.57 | 57.93 | |||
| U:49 [LYS] | A:723 [U] | 3.94 | 31.83 | |||
| U:52 [ALA] | A:723 [U] | 3.48 | 71.18 | |||
| U:53 [VAL] | A:723 [U] | 3.53 | 14.23 | |||
| U:54 [LYS] | A:1533 [C] | 2.94 | 66.21 | |||
| U:55 [ARG] | A:723 [U] | 4.73 | 68.88 | |||
| U:56 [HIS] | A:723 [U] | 4.0 | 3.79 | |||
| U:56 [HIS] | A:856 [C] | 3.11 | A:830 [G] | sugar:SC | 3.79 | |
| U:60 [LEU] | A:856 [C] | 4.92 | A:830 [G] | 0.0 | ||
| U:69 [ARG] | A:1099 [G] | 3.29 | A:1086 [U] | 63.66 | ||
| U:69 [ARG] | A:1100 [C] | 3.59 | 63.66 | |||
| U:70 [LEU] | A:1087 [G] | 2.93 | A:1098 [C] | base:BB | 63.66 | |
| U:70 [LEU] | A:1088 [G] | 3.77 | A:1097 [C] | 63.66 | ||
| U:70 [LEU] | A:1098 [C] | 4.69 | A:1087 [G] | 63.66 | ||
| U:70 [LEU] | A:1099 [G] | 3.88 | A:1086 [U] | 63.66 | ||
| U:71 [TYR] | A:1087 [G] | 4.31 | A:1098 [C] | 63.66 | ||
| U:71 [TYR] | A:1088 [G] | 4.15 | A:1097 [C] | 63.66 | ||
| U:71 [TYR] | A:1098 [C] | 2.41 | A:1087 [G] | sugar:BB | 63.66 | |
| U:71 [TYR] | A:1099 [G] | 3.26 | A:1086 [U] | 63.66 | ||
| U:71 [TYR] | A:1167 [A] | 3.49 | base/AA stacks | 63.66 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group27 | 7K00_U_A | U: 30s ribosomal protein s21, Escherichia coli (natural) A: 16s rRNA, Escherichia coli (natural) | P68679 | 30S ribosomal protein S21 | Bacterial small subunit ribosomal RNA | ✔ |
|
Interologs
Total number of interologs for this interface: 1
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 6S0X_u_a | 7K00_U_A | 0.61 | 0.94 | 2.04 | 0.43 | 30S ribosomal protein S21 | Bacterial small subunit ribosomal RNA | compare |