RNAprotDB

Contacts -

6XJQ_H	6XJQ_A	Distance	Base Pair	Hbond nuc:res	Base Stacking	Residue conservation
H:33 [SER]	A:32 [U]	2.77		base:BB		68.75
H:34 [SER]	A:32 [U]	4.31				67.78
H:35 [SER]	A:32 [U]	4.16				44.34
H:55 [SER]	A:32 [U]	2.68		sugar:SC		18.54
H:55 [SER]	A:33 [A]	3.4				18.54
H:57 [TYR]	A:32 [U]	3.29			base/AA stacks	31.99
H:58 [SER]	A:32 [U]	3.25		sugar:SC		40.22
H:58 [SER]	A:33 [A]	2.5				40.22
H:60 [SER]	A:33 [A]	3.41				45.0
H:104 [TYR]	A:32 [U]	3.2			base/AA stacks	3.16
H:104 [TYR]	A:33 [A]	3.47				3.16
H:105 [HIS]	A:33 [A]	2.88		base:BB		4.05
H:106 [TYR]	A:33 [A]	4.06				1.14
H:108 [ASN]	A:33 [A]	3.01				4.15
H:109 [TYR]	A:25 [U]	3.9	A:34 [U]			5.22
H:109 [TYR]	A:30 [G]	3.23			base/AA stacks	5.22
H:109 [TYR]	A:33 [A]	3.28				5.22
H:109 [TYR]	A:34 [U]	4.12	A:25 [U]			5.22
H:110 [TYR]	A:25 [U]	3.04	A:34 [U]			1.21
H:110 [TYR]	A:30 [G]	4.4				1.21
H:110 [TYR]	A:33 [A]	3.57				1.21
H:110 [TYR]	A:34 [U]	3.04	A:25 [U]		base/AA stacks	1.21
H:111 [TRP]	A:32 [U]	3.46				0.68
H:111 [TRP]	A:33 [A]	2.91				0.68
H:111 [TRP]	A:34 [U]	3.36	A:25 [U]			0.68

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

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