Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
View
Focus on
InterfaceRNA
Protein
All
Show chains
Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 7OF0_j
|
7OF0_A
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| j:24 [GLY] | A:2149 [G] | 4.13 | A:2252 [C] | 88.14 | ||
| j:24 [GLY] | A:2150 [U] | 3.32 | A:2250 [A] | 88.14 | ||
| j:24 [GLY] | A:2247 [C] | 3.49 | 88.14 | |||
| j:25 [GLY] | A:2149 [G] | 3.45 | A:2252 [C] | 39.01 | ||
| j:25 [GLY] | A:2150 [U] | 2.89 | A:2250 [A] | 39.01 | ||
| j:26 [GLN] | A:2150 [U] | 4.4 | A:2250 [A] | 11.48 | ||
| j:28 [ARG] | A:2149 [G] | 3.89 | A:2252 [C] | 97.84 | ||
| j:35 [ALA] | A:2149 [G] | 3.64 | A:2252 [C] | 24.77 | ||
| j:36 [ASN] | A:2147 [G] | 4.72 | A:2254 [C] | 72.02 | ||
| j:36 [ASN] | A:2148 [A] | 2.72 | A:2253 [U] | base:SC, sugar:SC | 72.02 | |
| j:36 [ASN] | A:2149 [G] | 3.37 | A:2252 [C] | 72.02 | ||
| j:36 [ASN] | A:2253 [U] | 4.4 | A:2148 [A] | 72.02 | ||
| j:36 [ASN] | A:2254 [C] | 3.41 | A:2147 [G] | 72.02 | ||
| j:37 [PRO] | A:2148 [A] | 3.3 | A:2253 [U] | 47.75 | ||
| j:37 [PRO] | A:2149 [G] | 3.95 | A:2252 [C] | 47.75 | ||
| j:38 [SER] | A:2147 [G] | 2.79 | A:2254 [C] | base:SC | 73.13 | |
| j:38 [SER] | A:2148 [A] | 3.94 | A:2253 [U] | 73.13 | ||
| j:38 [SER] | A:2254 [C] | 3.15 | A:2147 [G] | 73.13 | ||
| j:38 [SER] | A:2255 [C] | 3.35 | A:2145 [G] | 73.13 | ||
| j:39 [GLY] | A:2254 [C] | 3.64 | A:2147 [G] | 53.93 | ||
| j:44 [THR] | A:2255 [C] | 4.5 | A:2145 [G] | 80.43 | ||
| j:44 [THR] | A:2256 [U] | 3.92 | A:2144 [A] | 80.43 | ||
| j:48 [ASP] | A:2256 [U] | 4.51 | A:2144 [A] | 99.0 | ||
| j:60 [MET] | A:2256 [U] | 3.92 | A:2144 [A] | 59.72 | ||
| j:60 [MET] | A:2257 [C] | 3.43 | A:2143 [G] | 59.72 | ||
| j:61 [LYS] | A:2256 [U] | 4.92 | A:2144 [A] | 13.05 | ||
| j:61 [LYS] | A:2257 [C] | 2.72 | A:2143 [G] | 13.05 | ||
| j:61 [LYS] | A:2258 [A] | 2.98 | 13.05 | |||
| j:62 [GLY] | A:2256 [U] | 3.9 | A:2144 [A] | 56.41 | ||
| j:62 [GLY] | A:2257 [C] | 2.65 | A:2143 [G] | 56.41 | ||
| j:63 [GLN] | A:2256 [U] | 4.32 | A:2144 [A] | 85.95 | ||
| j:63 [GLN] | A:2257 [C] | 4.82 | A:2143 [G] | 85.95 | ||
| j:65 [ARG] | A:2255 [C] | 3.38 | A:2145 [G] | 57.1 | ||
| j:65 [ARG] | A:2256 [U] | 3.91 | A:2144 [A] | 57.1 | ||
| j:66 [ARG] | A:2254 [C] | 4.6 | A:2147 [G] | 94.5 | ||
| j:66 [ARG] | A:2255 [C] | 2.62 | A:2145 [G] | 94.5 | ||
| j:66 [ARG] | A:2256 [U] | 2.66 | A:2144 [A] | 94.5 | ||
| j:76 [ARG] | A:2082 [G] | 3.81 | A:2057 [C] | 63.79 | ||
| j:76 [ARG] | A:2083 [U] | 3.0 | A:2056 [G] | 63.79 | ||
| j:83 [GLU] | A:2082 [G] | 4.32 | A:2057 [C] | 88.73 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group31 | 7OF0_j_A | j: 39s ribosomal protein l52, mitochondrial, Homo sapiens (natural) A: 16s ribosomal RNA, Homo sapiens (natural) | Q86TS9 | Mitoribosomal protein mL52 | Bacterial large subunit ribosomal RNA | ✔ |
|
Interologs
Total number of interologs for this interface: 1