Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
Protein
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 7OF7_j
|
7OF7_A
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| j:24 [GLY] | A:2149 [G] | 3.89 | A:2252 [C] | 88.14 | ||
| j:24 [GLY] | A:2150 [U] | 3.5 | A:2250 [A] | 88.14 | ||
| j:24 [GLY] | A:2247 [C] | 3.16 | 88.14 | |||
| j:25 [GLY] | A:2149 [G] | 3.23 | A:2252 [C] | 39.01 | ||
| j:25 [GLY] | A:2150 [U] | 2.77 | A:2250 [A] | 39.01 | ||
| j:26 [GLN] | A:2150 [U] | 4.31 | A:2250 [A] | 11.48 | ||
| j:28 [ARG] | A:2149 [G] | 3.93 | A:2252 [C] | 97.84 | ||
| j:35 [ALA] | A:2149 [G] | 3.78 | A:2252 [C] | 24.77 | ||
| j:36 [ASN] | A:2147 [G] | 4.78 | A:2254 [C] | 72.02 | ||
| j:36 [ASN] | A:2148 [A] | 2.45 | A:2253 [U] | base:SC, sugar:SC | 72.02 | |
| j:36 [ASN] | A:2149 [G] | 3.22 | A:2252 [C] | base/AA stacks | 72.02 | |
| j:36 [ASN] | A:2253 [U] | 4.58 | A:2148 [A] | 72.02 | ||
| j:36 [ASN] | A:2254 [C] | 3.14 | A:2147 [G] | base:SC | 72.02 | |
| j:37 [PRO] | A:2148 [A] | 3.21 | A:2253 [U] | 47.75 | ||
| j:37 [PRO] | A:2149 [G] | 4.03 | A:2252 [C] | 47.75 | ||
| j:38 [SER] | A:2147 [G] | 2.8 | A:2254 [C] | base:SC | 73.13 | |
| j:38 [SER] | A:2148 [A] | 4.15 | A:2253 [U] | 73.13 | ||
| j:38 [SER] | A:2254 [C] | 2.89 | A:2147 [G] | 73.13 | ||
| j:38 [SER] | A:2255 [C] | 3.31 | A:2145 [G] | 73.13 | ||
| j:39 [GLY] | A:2254 [C] | 3.64 | A:2147 [G] | 53.93 | ||
| j:44 [THR] | A:2255 [C] | 4.52 | A:2145 [G] | 80.43 | ||
| j:44 [THR] | A:2256 [U] | 4.17 | A:2144 [A] | 80.43 | ||
| j:48 [ASP] | A:2256 [U] | 4.71 | A:2144 [A] | 99.0 | ||
| j:60 [MET] | A:2256 [U] | 3.85 | A:2144 [A] | 59.72 | ||
| j:60 [MET] | A:2257 [C] | 3.5 | A:2143 [G] | 59.72 | ||
| j:61 [LYS] | A:2257 [C] | 2.85 | A:2143 [G] | 13.05 | ||
| j:61 [LYS] | A:2258 [A] | 2.95 | 13.05 | |||
| j:62 [GLY] | A:2256 [U] | 3.79 | A:2144 [A] | 56.41 | ||
| j:62 [GLY] | A:2257 [C] | 2.76 | A:2143 [G] | 56.41 | ||
| j:63 [GLN] | A:2256 [U] | 4.26 | A:2144 [A] | 85.95 | ||
| j:63 [GLN] | A:2257 [C] | 4.9 | A:2143 [G] | 85.95 | ||
| j:65 [ARG] | A:2255 [C] | 3.39 | A:2145 [G] | 57.1 | ||
| j:65 [ARG] | A:2256 [U] | 3.84 | A:2144 [A] | 57.1 | ||
| j:66 [ARG] | A:2254 [C] | 4.71 | A:2147 [G] | 94.5 | ||
| j:66 [ARG] | A:2255 [C] | 2.76 | A:2145 [G] | 94.5 | ||
| j:66 [ARG] | A:2256 [U] | 2.74 | A:2144 [A] | 94.5 | ||
| j:76 [ARG] | A:2082 [G] | 3.75 | A:2057 [C] | 63.79 | ||
| j:76 [ARG] | A:2083 [U] | 3.17 | A:2056 [G] | 63.79 | ||
| j:80 [LEU] | A:2082 [G] | 5.0 | A:2057 [C] | 64.59 | ||
| j:83 [GLU] | A:2082 [G] | 4.34 | A:2057 [C] | 88.73 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group31 | 7OF7_j_A | j: 39s ribosomal protein l52, mitochondrial, Homo sapiens (natural) A: 16s ribosomal RNA, Homo sapiens (natural) | Q86TS9 | Mitoribosomal protein mL52 | Bacterial large subunit ribosomal RNA | ✔ |
|
Interologs
Total number of interologs for this interface: 1