RNAprotDB

All interfaces > All interologs > Interface groups > group32 > 1C9S_L_W

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

1C9S_L
1C9S_W
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
L:17 [ASP] W:104 [G] 4.61 77.78
L:18 [GLY] W:104 [G] 2.93 95.94
L:20 [ASN] W:102 [A] 3.26 68.96
L:20 [ASN] W:103 [U] 4.3 68.96
L:22 [ILE] W:102 [A] 3.76 82.45
L:24 [LEU] W:101 [G] 4.59 82.67
L:30 [THR] W:101 [G] 3.17 base:BB 98.35
L:31 [ARG] W:101 [G] 3.77 68.42
L:32 [PHE] W:101 [G] 2.97 sugar:BB base/AA stacks 78.95
L:32 [PHE] W:102 [A] 3.14 78.95
L:33 [HIS] W:102 [A] 4.5 82.51
L:34 [HIS] W:102 [A] 3.84 98.94
L:34 [HIS] W:105 [A] 4.09 98.94
L:34 [HIS] W:106 [G] 3.57 98.94
L:35 [SER] W:102 [A] 2.67 base:SC 75.49
L:35 [SER] W:103 [U] 3.79 75.49
L:35 [SER] W:105 [A] 3.27 75.49
L:36 [GLU] W:105 [A] 3.74 base/AA stacks 98.86
L:36 [GLU] W:106 [G] 2.62 base:SC, base:SC 98.86
L:37 [LYS] W:102 [A] 4.28 90.6
L:37 [LYS] W:103 [U] 3.55 sugar:SC 90.6
L:37 [LYS] W:104 [G] 3.08 90.6
L:37 [LYS] W:105 [A] 2.96 base:BB, base:BB 90.6
L:38 [LEU] W:104 [G] 4.62 96.03
L:39 [ASP] W:104 [G] 2.79 base:SC 94.59
L:56 [LYS] W:101 [G] 3.08 base:SC 98.84
L:56 [LYS] W:155 [A] 3.87 98.84
L:58 [ARG] W:101 [G] 3.3 base:SC 88.73
L:58 [ARG] W:102 [A] 3.43 88.73
L:58 [ARG] W:155 [A] 4.65 88.73

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group32 1C9S_L_W L: Trp RNA-binding attenuation protein, Geobacillus stearothermophilus (genetically engineered) W: Single stranded RNA (55-mer) Q9X6J6 Trp RNA-binding attenuation protein (TRAP) ✘

Interologs

Total number of interologs for this interface: 2

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1C9S_L_W 1GTN_L_W 0.92 0.95 0.25 0.67 Trp RNA-binding attenuation protein (TRAP) compare
1C9S_L_W 1GTF_L_W 0.94 0.98 0.14 0.67 Trp RNA-binding attenuation protein (TRAP) compare