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All interfaces > All interologs > Interface groups > group32 > 1GTN_L_W

Interface analysis

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Protein

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Licorice
Surface

RNA

Cartoon
Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

1GTN_L
1GTN_W
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
L:17 [ASP] W:106 [G] 4.94 77.78
L:18 [GLY] W:106 [G] 3.1 95.94
L:20 [ASN] W:104 [C] 4.67 68.96
L:24 [LEU] W:103 [G] 4.18 82.67
L:30 [THR] W:103 [G] 2.78 base:BB 98.35
L:31 [ARG] W:103 [G] 3.83 68.42
L:32 [PHE] W:103 [G] 3.13 sugar:BB base/AA stacks 78.95
L:32 [PHE] W:104 [C] 3.93 78.95
L:34 [HIS] W:107 [A] 4.21 98.94
L:34 [HIS] W:108 [G] 3.88 98.94
L:35 [SER] W:104 [C] 3.29 sugar:SC 75.49
L:35 [SER] W:107 [A] 3.45 75.49
L:36 [GLU] W:107 [A] 3.25 base/AA stacks 98.86
L:36 [GLU] W:108 [G] 2.82 base:SC, base:SC 98.86
L:37 [LYS] W:104 [C] 2.39 sugar:SC 90.6
L:37 [LYS] W:106 [G] 3.49 90.6
L:37 [LYS] W:107 [A] 2.94 base:BB, base:BB 90.6
L:38 [LEU] W:106 [G] 4.86 96.03
L:38 [LEU] W:107 [A] 4.96 96.03
L:39 [ASP] W:106 [G] 2.82 base:SC, base:SC, base:SC 94.59
L:56 [LYS] W:102 [A] 3.99 98.84
L:56 [LYS] W:103 [G] 3.1 base:SC 98.84
L:58 [ARG] W:102 [A] 4.75 88.73
L:58 [ARG] W:103 [G] 3.56 base:SC 88.73
L:58 [ARG] W:104 [C] 4.23 88.73

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group32 1GTN_L_W L: Trp RNA-binding attenuation protein, Bacillus stearothermophilus (genetically engineered) W: (gagcc)11g 56-nucleotide RNA Q9X6J6 Trp RNA-binding attenuation protein (TRAP) ✘

Interologs

Total number of interologs for this interface: 2

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1C9S_L_W 1GTN_L_W 0.92 0.95 0.25 0.67 Trp RNA-binding attenuation protein (TRAP) compare
1GTF_L_W 1GTN_L_W 0.98 0.97 0.22 0.83 Trp RNA-binding attenuation protein (TRAP) compare