Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
Protein
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 1DI2_B
|
1DI2_C,D
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| B:112 [MET] | D:24 [G] | 4.18 | C:7 [C] | 90.83 | ||
| B:112 [MET] | D:25 [C] | 2.94 | C:6 [G] | 90.83 | ||
| B:114 [VAL] | D:24 [G] | 3.6 | C:7 [C] | 87.45 | ||
| B:114 [VAL] | D:25 [C] | 4.14 | C:6 [G] | 87.45 | ||
| B:115 [GLY] | D:24 [G] | 3.53 | C:7 [C] | 83.9 | ||
| B:115 [GLY] | D:25 [C] | 4.97 | C:6 [G] | 83.9 | ||
| B:118 [GLN] | C:8 [G] | 3.54 | D:23 [C] | 93.86 | ||
| B:118 [GLN] | C:9 [C] | 4.29 | D:22 [G] | 93.86 | ||
| B:118 [GLN] | D:22 [G] | 4.84 | C:9 [C] | 93.86 | ||
| B:118 [GLN] | D:23 [C] | 2.6 | C:8 [G] | base:SC, sugar:SC | 93.86 | |
| B:118 [GLN] | D:24 [G] | 3.26 | C:7 [C] | sugar:SC | 93.86 | |
| B:119 [GLU] | C:8 [G] | 2.62 | D:23 [C] | sugar:SC | 94.25 | |
| B:119 [GLU] | C:9 [C] | 3.16 | D:22 [G] | 94.25 | ||
| B:122 [VAL] | C:9 [C] | 4.23 | D:22 [G] | 75.52 | ||
| B:122 [VAL] | C:10 [C] | 3.88 | D:21 [G] | 75.52 | ||
| B:164 [GLN] | D:26 [G] | 2.92 | C:5 [C] | 78.88 | ||
| B:167 [LYS] | D:24 [G] | 3.55 | C:7 [C] | 94.06 | ||
| B:167 [LYS] | D:25 [C] | 2.89 | C:6 [G] | 94.06 | ||
| B:168 [ARG] | D:25 [C] | 4.52 | C:6 [G] | 72.81 | ||
| B:168 [ARG] | D:26 [G] | 3.9 | C:5 [C] | 72.81 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group33 | 1DI2_B_C,D | B: Double stranded RNA binding protein a, Xenopus laevis (genetically engineered) C: N/A D: N/A | Q91836 | dsRNA-binding domain-like | ✘ |
|
Interologs
Total number of interologs for this interface: 2
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 1DI2_B_C,D | 1YZ9_A_C,D | 0.68 | 0.77 | 0.71 | 0.22 | dsRNA-binding domain-like | compare | |
| 1DI2_B_C,D | 1YYK_A_C,D | 0.70 | 0.73 | 0.84 | 0.0 | dsRNA-binding domain-like | compare |