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All interfaces > All interologs > Interface groups > group33 > 1YYK_A_C,D

Interface analysis

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Protein

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

1YYK_A
1YYK_C,D
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:151 [ASP] C:9 [C] 4.04 D:28 [G] 85.22
A:151 [ASP] C:10 [G] 2.48 D:27 [C] sugar:SC 85.22
A:153 [LYS] C:9 [C] 3.08 D:28 [G] 93.91
A:153 [LYS] C:10 [G] 2.87 D:27 [C] 93.91
A:154 [THR] C:9 [C] 2.78 D:28 [G] sugar:SC 81.9
A:154 [THR] C:10 [G] 3.19 D:27 [C] sugar:SC 81.9
A:154 [THR] D:28 [G] 4.36 C:9 [C] 81.9
A:154 [THR] D:29 [A] 4.59 C:8 [U] 81.9
A:157 [GLN] C:8 [U] 2.4 D:29 [A] base:SC, sugar:SC 87.34
A:157 [GLN] C:9 [C] 3.36 D:28 [G] 87.34
A:157 [GLN] D:29 [A] 4.43 C:8 [U] 87.34
A:157 [GLN] D:30 [A] 4.21 C:7 [U] 87.34
A:158 [GLU] D:29 [A] 2.63 C:8 [U] sugar:SC 84.06
A:158 [GLU] D:30 [A] 3.89 C:7 [U] 84.06
A:161 [GLN] D:30 [A] 3.67 C:7 [U] 83.52
A:161 [GLN] D:31 [U] 3.19 C:6 [A] 83.52
A:162 [LYS] D:31 [U] 4.78 C:6 [A] 56.87
A:167 [ARG] C:7 [U] 4.61 D:30 [A] 38.8
A:167 [ARG] C:8 [U] 3.66 D:29 [A] 38.8
A:203 [LYS] C:9 [C] 4.59 D:28 [G] 81.84
A:203 [LYS] C:10 [G] 2.55 D:27 [C] 81.84
A:203 [LYS] C:11 [C] 3.74 D:26 [G] 81.84
A:206 [GLU] C:10 [G] 4.29 D:27 [C] 86.16
A:207 [GLN] C:10 [G] 4.23 D:27 [C] 77.77
A:207 [GLN] C:11 [C] 4.92 D:26 [G] 77.77

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group33 1YYK_A_C,D A: Ribonuclease iii, Aquifex aeolicus (genetically engineered) C: N/A D: N/A O67082 dsRNA-binding domain-like ✘

Interologs

Total number of interologs for this interface: 1

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1DI2_B_C,D 1YYK_A_C,D 0.70 0.73 0.84 0.0 dsRNA-binding domain-like compare