Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 1YZ9_A
|
1YZ9_C,D
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| A:60 [PRO] | C:10 [C] | 4.02 | F:22 [G] | 72.39 | ||
| A:60 [PRO] | C:11 [G] | 3.61 | F:21 [C] | 72.39 | ||
| A:61 [ASN] | C:11 [G] | 4.31 | F:21 [C] | 58.74 | ||
| A:66 [PHE] | C:10 [C] | 3.19 | F:22 [G] | 49.78 | ||
| A:66 [PHE] | C:11 [G] | 3.27 | F:21 [C] | 49.78 | ||
| A:143 [ILE] | C:10 [C] | 4.52 | F:22 [G] | 5.8 | ||
| A:144 [LYS] | C:10 [C] | 3.18 | F:22 [G] | sugar:BB | 30.63 | |
| A:145 [GLU] | C:9 [G] | 2.99 | D:23 [C] | base:BB | 0.75 | |
| A:145 [GLU] | C:10 [C] | 4.34 | F:22 [G] | 0.75 | ||
| A:145 [GLU] | D:23 [C] | 4.41 | C:9 [G] | 0.75 | ||
| A:145 [GLU] | D:24 [G] | 3.43 | C:8 [C] | 0.75 | ||
| A:146 [GLY] | C:9 [G] | 2.58 | D:23 [C] | sugar:BB | 2.6 | |
| A:146 [GLY] | C:10 [C] | 3.4 | F:22 [G] | 2.6 | ||
| A:147 [ARG] | C:9 [G] | 4.74 | D:23 [C] | 17.06 | ||
| A:147 [ARG] | D:24 [G] | 3.78 | C:8 [C] | 17.06 | ||
| A:147 [ARG] | D:25 [A] | 3.63 | C:7 [U] | 17.06 | ||
| A:147 [ARG] | D:26 [A] | 4.86 | C:6 [U] | 17.06 | ||
| A:148 [VAL] | C:9 [G] | 3.82 | D:23 [C] | 1.59 | ||
| A:150 [LYS] | D:26 [A] | 3.19 | C:6 [U] | sugar:SC | 35.53 | |
| A:151 [ASP] | C:7 [U] | 3.97 | D:25 [A] | sugar:SC | 79.58 | |
| A:151 [ASP] | C:8 [C] | 2.65 | D:24 [G] | sugar:SC | 79.58 | |
| A:153 [LYS] | C:7 [U] | 3.39 | D:25 [A] | 92.85 | ||
| A:153 [LYS] | C:8 [C] | 2.79 | D:24 [G] | 92.85 | ||
| A:154 [THR] | C:7 [U] | 2.82 | D:25 [A] | base:SC, sugar:SC | 78.97 | |
| A:154 [THR] | C:8 [C] | 3.06 | D:24 [G] | sugar:SC | 78.97 | |
| A:154 [THR] | D:26 [A] | 4.66 | C:6 [U] | 78.97 | ||
| A:157 [GLN] | C:6 [U] | 2.81 | D:26 [A] | base:SC, sugar:SC | 86.42 | |
| A:157 [GLN] | C:7 [U] | 3.17 | D:25 [A] | 86.42 | ||
| A:157 [GLN] | D:26 [A] | 4.23 | C:6 [U] | 86.42 | ||
| A:157 [GLN] | D:27 [C] | 3.48 | C:5 [C] | 86.42 | ||
| A:158 [GLU] | D:26 [A] | 2.79 | C:6 [U] | sugar:SC | 84.57 | |
| A:158 [GLU] | D:27 [C] | 3.3 | C:5 [C] | 84.57 | ||
| A:161 [GLN] | D:27 [C] | 3.53 | C:5 [C] | 81.47 | ||
| A:161 [GLN] | D:28 [U] | 3.67 | C:4 [A] | 81.47 | ||
| A:167 [ARG] | C:5 [C] | 4.65 | D:27 [C] | 5.34 | ||
| A:167 [ARG] | C:6 [U] | 3.61 | D:26 [A] | 5.34 | ||
| A:167 [ARG] | D:27 [C] | 2.92 | C:5 [C] | base:SC, base:SC | 5.34 | |
| A:167 [ARG] | D:28 [U] | 3.99 | C:4 [A] | 5.34 | ||
| A:203 [LYS] | C:8 [C] | 3.52 | D:24 [G] | 86.44 | ||
| A:203 [LYS] | C:9 [G] | 2.88 | D:23 [C] | 86.44 | ||
| A:206 [GLU] | C:8 [C] | 4.29 | D:24 [G] | 88.12 | ||
| A:207 [GLN] | C:8 [C] | 3.84 | D:24 [G] | 76.45 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group33 | 1YZ9_A_C,D | A: Ribonuclease iii, Aquifex aeolicus (genetically engineered) C: N/A D: N/A | O67082 | RNase III catalytic domain-like & dsRNA-binding domain-like | ✘ |
|
Interologs
Total number of interologs for this interface: 1
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 1DI2_B_C,D | 1YZ9_A_C,D | 0.68 | 0.77 | 0.71 | 0.22 | dsRNA-binding domain-like | compare |