RNAprotDB

All interfaces > All interologs > Interface groups > group34 > 1EC6_A_D

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

1EC6_A
1EC6_D
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:14 [GLU] D:12 [U] 4.39 59.82
A:14 [GLU] D:13 [C] 2.63 base:SC 59.82
A:15 [ASN] D:10 [G] 3.58 43.4
A:15 [ASN] D:11 [A] 3.0 43.4
A:16 [LEU] D:11 [A] 4.65 40.45
A:17 [VAL] D:13 [C] 3.27 84.11
A:18 [GLY] D:11 [A] 4.56 90.27
A:18 [GLY] D:12 [U] 3.2 90.27
A:18 [GLY] D:13 [C] 4.49 90.27
A:19 [ALA] D:11 [A] 4.87 69.12
A:19 [ALA] D:12 [U] 3.47 69.12
A:21 [LEU] D:12 [U] 4.35 93.19
A:21 [LEU] D:13 [C] 3.27 93.19
A:21 [LEU] D:14 [A] 3.65 93.19
A:22 [GLY] D:12 [U] 2.22 99.0
A:22 [GLY] D:13 [C] 3.56 99.0
A:23 [LYS] D:12 [U] 3.14 base:BB 81.91
A:23 [LYS] D:13 [C] 3.58 81.91
A:24 [GLY] D:12 [U] 3.84 49.07
A:24 [GLY] D:13 [C] 3.21 49.07
A:24 [GLY] D:14 [A] 3.2 49.07
A:25 [GLY] D:12 [U] 4.49 98.89
A:25 [GLY] D:13 [C] 3.84 98.89
A:25 [GLY] D:14 [A] 3.36 98.89
A:28 [LEU] D:14 [A] 3.9 88.7
A:29 [VAL] D:14 [A] 3.53 64.92
A:38 [ARG] D:15 [C] 3.73 57.09
A:39 [ILE] D:14 [A] 3.68 90.61
A:40 [GLN] D:14 [A] 3.37 62.18
A:40 [GLN] D:15 [C] 2.28 base:SC, base:SC, sugar:SC 62.18
A:40 [GLN] D:16 [C] 4.78 D:5 [A] 62.18
A:41 [ILE] D:14 [A] 2.61 base:BB, base:BB 78.75
A:41 [ILE] D:15 [C] 4.72 78.75
A:42 [SER] D:14 [A] 3.51 69.12
A:43 [LYS] D:5 [A] 4.52 D:16 [C] 55.36
A:43 [LYS] D:6 [C] 4.81 55.36
A:43 [LYS] D:14 [A] 4.89 55.36
A:43 [LYS] D:15 [C] 4.54 55.36
A:43 [LYS] D:16 [C] 2.93 D:5 [A] base:SC 55.36
A:44 [LYS] D:6 [C] 3.87 50.83
A:44 [LYS] D:7 [C] 2.97 50.83
A:44 [LYS] D:13 [C] 3.58 50.83
A:45 [GLY] D:7 [C] 3.85 49.24
A:52 [ARG] D:9 [A] 4.83 2.04
A:54 [ARG] D:13 [C] 3.03 base:SC, base:SC 92.79
A:54 [ARG] D:14 [A] 4.5 92.79
A:75 [ARG] D:12 [U] 4.65 53.13
A:79 [GLU] D:12 [U] 4.52 45.97
A:83 [ARG] D:11 [A] 3.2 sugar:SC base/AA stacks 66.98
A:83 [ARG] D:12 [U] 4.39 66.98
A:88 [GLN] D:10 [G] 3.03 base:SC, base:SC, sugar:SC 66.8
A:88 [GLN] D:11 [A] 3.58 base/AA stacks 66.8
A:89 [LYS] D:10 [G] 4.13 50.6
A:90 [VAL] D:10 [G] 4.62 38.8

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group34 1EC6_A_D A: RNA-binding protein nova-2, Homo sapiens (genetically engineered) D: 20-mer RNA hairpin Q9UNW9 Eukaryotic type KH-domain (KH-domain type I) ✘

Interologs

Total number of interologs for this interface: 2

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1EC6_A_D 4WAN_C_D 0.71 0.65 2.65 0.33 Eukaryotic type KH-domain (KH-domain type I) compare
1EC6_A_D 4WAN_E_F 0.80 0.65 1.88 0.31 Eukaryotic type KH-domain (KH-domain type I) compare