Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
View
Focus on
InterfaceRNA
Protein
All
Show chains
Interface
show interface as licoriceCommon contacts -
1EC6_A
|
1EC6_D
|
4WAN_C
|
4WAN_D
|
Conserved?
|
---|---|---|---|---|
A:43 [LYS] | D:14 [A] | C:194 [SER] | D:8 [A] | ✔ |
A:39 [ILE] | D:14 [A] | C:187 [ILE] | D:8 [A] | ✔ |
A:23 [LYS] | D:12 [U] | C:171 [PRO] | D:6 [U] | ✔ |
A:23 [LYS] | D:13 [C] | C:171 [PRO] | D:7 [A] | ✔ |
A:24 [GLY] | D:12 [U] | C:172 [ARG] | D:6 [U] | ✔ |
A:24 [GLY] | D:13 [C] | C:172 [ARG] | D:7 [A] | ✔ |
A:24 [GLY] | D:14 [A] | C:172 [ARG] | D:8 [A] | ✔ |
A:15 [ASN] | D:11 [A] | C:163 [ASN] | D:5 [C] | ✔ |
A:19 [ALA] | D:12 [U] | C:167 [LEU] | D:6 [U] | ✔ |
A:44 [LYS] | D:13 [C] | C:195 [VAL] | D:7 [A] | ✔ |
A:28 [LEU] | D:14 [A] | C:176 [LEU] | D:8 [A] | ✔ |
A:21 [LEU] | D:12 [U] | C:169 [LEU] | D:6 [U] | ✔ |
A:21 [LEU] | D:13 [C] | C:169 [LEU] | D:7 [A] | ✔ |
A:21 [LEU] | D:14 [A] | C:169 [LEU] | D:8 [A] | ✔ |
A:40 [GLN] | D:14 [A] | C:188 [ALA] | D:8 [A] | ✔ |
A:40 [GLN] | D:15 [C] | C:188 [ALA] | D:9 [C] | ✔ |
A:17 [VAL] | D:13 [C] | C:165 [VAL] | D:7 [A] | ✔ |
A:38 [ARG] | D:15 [C] | C:186 [LYS] | D:9 [C] | ✔ |
A:25 [GLY] | D:13 [C] | C:173 [GLY] | D:7 [A] | ✔ |
A:25 [GLY] | D:14 [A] | C:173 [GLY] | D:8 [A] | ✔ |
A:42 [SER] | D:14 [A] | C:190 [ARG] | D:8 [A] | ✔ |
A:18 [GLY] | D:12 [U] | C:166 [GLY] | D:6 [U] | ✔ |
A:18 [GLY] | D:13 [C] | C:166 [GLY] | D:7 [A] | ✔ |
A:29 [VAL] | D:14 [A] | C:177 [ARG] | D:8 [A] | ✔ |
A:22 [GLY] | D:12 [U] | C:170 [GLY] | D:6 [U] | ✔ |
A:22 [GLY] | D:13 [C] | C:170 [GLY] | D:7 [A] | ✔ |
A:41 [ILE] | D:14 [A] | C:189 [ILE] | D:8 [A] | ✔ |
A:43 [LYS] | D:15 [C] | C:194 [SER] | D:9 [C] | ❌ 4WAN_C_D |
A:19 [ALA] | D:11 [A] | C:167 [LEU] | D:5 [C] | ❌ 4WAN_C_D |
A:88 [GLN] | D:11 [A] | C:248 [GLN] | D:5 [C] | ❌ 4WAN_C_D |
A:25 [GLY] | D:12 [U] | C:173 [GLY] | D:6 [U] | ❌ 4WAN_C_D |
A:18 [GLY] | D:11 [A] | C:166 [GLY] | D:5 [C] | ❌ 4WAN_C_D |
A:41 [ILE] | D:15 [C] | C:189 [ILE] | D:9 [C] | ❌ 4WAN_C_D |
A:15 [ASN] | D:13 [C] | C:163 [ASN] | D:7 [A] | ❌ 1EC6_A_D |
A:15 [ASN] | D:12 [U] | C:163 [ASN] | D:6 [U] | ❌ 1EC6_A_D |
A:42 [SER] | D:15 [C] | C:190 [ARG] | D:9 [C] | ❌ 1EC6_A_D |
A:43 [LYS] | D:13 [C] | C:194 [SER] | D:7 [A] | ❌ 1EC6_A_D |
A:45 [GLY] | D:13 [C] | C:196 [LYS] | D:7 [A] | ❌ 1EC6_A_D |
A:45 [GLY] | D:12 [U] | C:196 [LYS] | D:6 [U] | ❌ 1EC6_A_D |
A:75 [ARG] | D:12 [U] | C:237 [ILE] | D:6 [U] | ❌ 4WAN_C:237 no longer at interface |
A:54 [ARG] | D:13 [C] | C:215 [LEU] | D:7 [A] | ❌ 4WAN_C:215 no longer at interface |
A:54 [ARG] | D:14 [A] | C:215 [LEU] | D:8 [A] | ❌ 4WAN_C:215 no longer at interface |
A:79 [GLU] | D:12 [U] | C:241 [ALA] | D:6 [U] | ❌ 4WAN_C:241 no longer at interface |
A:14 [GLU] | D:12 [U] | C:162 [VAL] | D:6 [U] | ❌ 4WAN_C:162 no longer at interface |
A:14 [GLU] | D:13 [C] | C:162 [VAL] | D:7 [A] | ❌ 4WAN_C:162 no longer at interface |
A:16 [LEU] | D:11 [A] | C:164 [PHE] | D:5 [C] | ❌ 4WAN_C:164 no longer at interface |
Properties of this pair
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
---|---|---|---|---|---|---|---|---|---|---|---|---|
Eukaryotic type KH-domain (KH-domain type I) | 0.65 | 2.65 | 0.33 | 0.73 | 0.16 | 0.69 | 0.56 | 0.71 | 0.69 | 0.22 | 0.37 |
Other pairs involving 1EC6_A_D or 4WAN_C_D
Total number of entries: 3
Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
---|---|---|---|---|---|---|---|---|
1EC6_A_D | 4WAN_E_F | 0.80 | 0.65 | 1.88 | 0.31 | Eukaryotic type KH-domain (KH-domain type I) | compare | |
1EC6_A_D | 4WAN_C_D | 0.71 | 0.65 | 2.65 | 0.33 | Eukaryotic type KH-domain (KH-domain type I) | compare | |
4WAN_C_D | 4WAN_E_F | 0.96 | 0.94 | 0.68 | 0.89 | Eukaryotic type KH-domain (KH-domain type I) | compare |