RNAprotDB

All interfaces > All interologs > Interface groups > group34 > 4WAN_C_D

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

4WAN_C
4WAN_D
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
C:163 [ASN] D:5 [C] 4.66 93.62
C:163 [ASN] D:6 [U] 3.73 93.62
C:163 [ASN] D:7 [A] 3.69 base:SC 93.62
C:165 [VAL] D:7 [A] 3.57 72.33
C:166 [GLY] D:6 [U] 3.25 92.07
C:166 [GLY] D:7 [A] 4.08 92.07
C:167 [LEU] D:6 [U] 3.87 76.77
C:169 [LEU] D:6 [U] 3.83 69.65
C:169 [LEU] D:7 [A] 3.14 69.65
C:169 [LEU] D:8 [A] 3.75 69.65
C:170 [GLY] D:6 [U] 2.97 99.0
C:170 [GLY] D:7 [A] 3.85 99.0
C:171 [PRO] D:6 [U] 3.49 96.82
C:171 [PRO] D:7 [A] 3.68 96.82
C:172 [ARG] D:6 [U] 4.06 82.9
C:172 [ARG] D:7 [A] 2.72 82.9
C:172 [ARG] D:8 [A] 3.56 82.9
C:173 [GLY] D:7 [A] 3.65 97.04
C:173 [GLY] D:8 [A] 3.56 97.04
C:176 [LEU] D:8 [A] 3.36 68.17
C:177 [ARG] D:8 [A] 4.02 77.92
C:186 [LYS] D:9 [C] 4.05 70.35
C:186 [LYS] D:10 [A] 3.57 70.35
C:187 [ILE] D:8 [A] 3.58 88.18
C:188 [ALA] D:8 [A] 3.59 33.53
C:188 [ALA] D:9 [C] 3.77 33.53
C:189 [ILE] D:8 [A] 3.02 base:BB, base:BB 86.14
C:190 [ARG] D:8 [A] 3.53 88.89
C:190 [ARG] D:9 [C] 2.71 base:SC, base:SC 88.89
C:193 [GLY] D:7 [A] 4.96 90.08
C:194 [SER] D:7 [A] 3.49 91.71
C:194 [SER] D:8 [A] 4.89 91.71
C:195 [VAL] D:7 [A] 4.98 44.3
C:196 [LYS] D:6 [U] 3.41 75.76
C:196 [LYS] D:7 [A] 3.32 75.76
C:199 [LYS] D:7 [A] 4.89 43.93
C:199 [LYS] D:8 [A] 4.55 43.93
C:204 [LEU] D:9 [C] 3.74 1.74
C:205 [PRO] D:9 [C] 3.26 34.37
C:247 [GLY] D:3 [U] 3.45 0.57
C:248 [GLN] D:3 [U] 3.74 21.81
C:249 [ASN] D:3 [U] 2.99 base:BB 82.33
C:250 [ASP] D:3 [U] 4.84 34.3
C:252 [LYS] D:3 [U] 3.16 84.7
C:252 [LYS] D:5 [C] 2.64 base:SC 84.7
C:252 [LYS] D:6 [U] 3.56 84.7
C:253 [ARG] D:3 [U] 4.12 47.07
C:253 [ARG] D:4 [A] 4.91 47.07
C:255 [GLN] D:6 [U] 2.95 base:SC 91.6
C:256 [LEU] D:3 [U] 3.58 74.87
C:256 [LEU] D:4 [A] 2.79 sugar:BB 74.87
C:256 [LEU] D:5 [C] 3.27 74.87
C:256 [LEU] D:6 [U] 4.11 74.87
C:257 [ARG] D:2 [A] 3.42 sugar:SC 69.54
C:257 [ARG] D:4 [A] 3.31 69.54
C:259 [LEU] D:4 [A] 3.97 79.82
C:259 [LEU] D:5 [C] 3.48 79.82
C:259 [LEU] D:6 [U] 3.4 79.82
C:259 [LEU] D:7 [A] 4.08 79.82
C:260 [ALA] D:4 [A] 3.32 87.55
C:265 [THR] D:4 [A] 3.53 86.25
C:266 [LEU] D:4 [A] 3.76 38.28
C:267 [ARG] D:4 [A] 2.6 base:BB, base:BB 78.95
C:268 [GLU] D:4 [A] 4.27 42.72
C:269 [ASP] D:2 [A] 4.52 62.22

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group34 4WAN_C_D C: Branchpoint-bridging protein, Saccharomyces cerevisiae (genetically engineered) D: N/A Q12186 Eukaryotic type KH-domain (KH-domain type I) ✘

Interologs

Total number of interologs for this interface: 2

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1EC6_A_D 4WAN_C_D 0.71 0.65 2.65 0.33 Eukaryotic type KH-domain (KH-domain type I) compare
4WAN_C_D 4WAN_E_F 0.96 0.94 0.68 0.89 Eukaryotic type KH-domain (KH-domain type I) compare