Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
View
Focus on
InterfaceRNA
Protein
All
Show chains
Interface
show interface as licoriceCommon contacts -
4WAN_C
|
4WAN_D
|
4WAN_E
|
4WAN_F
|
Conserved?
|
---|---|---|---|---|
C:188 [ALA] | D:8 [A] | E:188 [ALA] | F:8 [A] | ✔ |
C:188 [ALA] | D:9 [C] | E:188 [ALA] | F:9 [C] | ✔ |
C:171 [PRO] | D:6 [U] | E:171 [PRO] | F:6 [U] | ✔ |
C:171 [PRO] | D:7 [A] | E:171 [PRO] | F:7 [A] | ✔ |
C:253 [ARG] | D:3 [U] | E:253 [ARG] | F:3 [U] | ✔ |
C:253 [ARG] | D:4 [A] | E:253 [ARG] | F:4 [A] | ✔ |
C:205 [PRO] | D:9 [C] | E:205 [PRO] | F:9 [C] | ✔ |
C:195 [VAL] | D:7 [A] | E:195 [VAL] | F:7 [A] | ✔ |
C:163 [ASN] | D:5 [C] | E:163 [ASN] | F:5 [C] | ✔ |
C:163 [ASN] | D:6 [U] | E:163 [ASN] | F:6 [U] | ✔ |
C:163 [ASN] | D:7 [A] | E:163 [ASN] | F:7 [A] | ✔ |
C:256 [LEU] | D:3 [U] | E:256 [LEU] | F:3 [U] | ✔ |
C:256 [LEU] | D:4 [A] | E:256 [LEU] | F:4 [A] | ✔ |
C:256 [LEU] | D:5 [C] | E:256 [LEU] | F:5 [C] | ✔ |
C:256 [LEU] | D:6 [U] | E:256 [LEU] | F:6 [U] | ✔ |
C:166 [GLY] | D:6 [U] | E:166 [GLY] | F:6 [U] | ✔ |
C:166 [GLY] | D:7 [A] | E:166 [GLY] | F:7 [A] | ✔ |
C:172 [ARG] | D:6 [U] | E:172 [ARG] | F:6 [U] | ✔ |
C:172 [ARG] | D:7 [A] | E:172 [ARG] | F:7 [A] | ✔ |
C:172 [ARG] | D:8 [A] | E:172 [ARG] | F:8 [A] | ✔ |
C:265 [THR] | D:4 [A] | E:265 [THR] | F:4 [A] | ✔ |
C:177 [ARG] | D:8 [A] | E:177 [ARG] | F:8 [A] | ✔ |
C:170 [GLY] | D:6 [U] | E:170 [GLY] | F:6 [U] | ✔ |
C:170 [GLY] | D:7 [A] | E:170 [GLY] | F:7 [A] | ✔ |
C:248 [GLN] | D:3 [U] | E:248 [GLN] | F:3 [U] | ✔ |
C:189 [ILE] | D:8 [A] | E:189 [ILE] | F:8 [A] | ✔ |
C:259 [LEU] | D:4 [A] | E:259 [LEU] | F:4 [A] | ✔ |
C:259 [LEU] | D:5 [C] | E:259 [LEU] | F:5 [C] | ✔ |
C:259 [LEU] | D:6 [U] | E:259 [LEU] | F:6 [U] | ✔ |
C:259 [LEU] | D:7 [A] | E:259 [LEU] | F:7 [A] | ✔ |
C:173 [GLY] | D:7 [A] | E:173 [GLY] | F:7 [A] | ✔ |
C:173 [GLY] | D:8 [A] | E:173 [GLY] | F:8 [A] | ✔ |
C:266 [LEU] | D:4 [A] | E:266 [LEU] | F:4 [A] | ✔ |
C:260 [ALA] | D:4 [A] | E:260 [ALA] | F:4 [A] | ✔ |
C:194 [SER] | D:7 [A] | E:194 [SER] | F:7 [A] | ✔ |
C:194 [SER] | D:8 [A] | E:194 [SER] | F:8 [A] | ✔ |
C:250 [ASP] | D:3 [U] | E:250 [ASP] | F:3 [U] | ✔ |
C:257 [ARG] | D:4 [A] | E:257 [ARG] | F:4 [A] | ✔ |
C:196 [LYS] | D:7 [A] | E:196 [LYS] | F:7 [A] | ✔ |
C:190 [ARG] | D:8 [A] | E:190 [ARG] | F:8 [A] | ✔ |
C:190 [ARG] | D:9 [C] | E:190 [ARG] | F:9 [C] | ✔ |
C:167 [LEU] | D:6 [U] | E:167 [LEU] | F:6 [U] | ✔ |
C:193 [GLY] | D:7 [A] | E:193 [GLY] | F:7 [A] | ✔ |
C:176 [LEU] | D:8 [A] | E:176 [LEU] | F:8 [A] | ✔ |
C:249 [ASN] | D:3 [U] | E:249 [ASN] | F:3 [U] | ✔ |
C:255 [GLN] | D:6 [U] | E:255 [GLN] | F:6 [U] | ✔ |
C:252 [LYS] | D:3 [U] | E:252 [LYS] | F:3 [U] | ✔ |
C:252 [LYS] | D:5 [C] | E:252 [LYS] | F:5 [C] | ✔ |
C:252 [LYS] | D:6 [U] | E:252 [LYS] | F:6 [U] | ✔ |
C:186 [LYS] | D:9 [C] | E:186 [LYS] | F:9 [C] | ✔ |
C:186 [LYS] | D:10 [A] | E:186 [LYS] | F:10 [A] | ✔ |
C:247 [GLY] | D:3 [U] | E:247 [GLY] | F:3 [U] | ✔ |
C:169 [LEU] | D:6 [U] | E:169 [LEU] | F:6 [U] | ✔ |
C:169 [LEU] | D:7 [A] | E:169 [LEU] | F:7 [A] | ✔ |
C:169 [LEU] | D:8 [A] | E:169 [LEU] | F:8 [A] | ✔ |
C:165 [VAL] | D:7 [A] | E:165 [VAL] | F:7 [A] | ✔ |
C:187 [ILE] | D:8 [A] | E:187 [ILE] | F:8 [A] | ✔ |
C:267 [ARG] | D:4 [A] | E:267 [ARG] | F:4 [A] | ✔ |
C:196 [LYS] | D:6 [U] | E:196 [LYS] | F:6 [U] | ❌ 4WAN_E_F |
C:165 [VAL] | D:6 [U] | E:165 [VAL] | F:6 [U] | ❌ 4WAN_C_D |
C:267 [ARG] | D:3 [U] | E:267 [ARG] | F:3 [U] | ❌ 4WAN_C_D |
C:257 [ARG] | D:2 [A] | E:257 [ARG] | F:1 [U] | ❌ 4WAN_F:1 no longer at interface |
C:199 [LYS] | D:7 [A] | E:199 [LYS] | F:7 [A] | ❌ 4WAN_E:199 no longer at interface |
C:199 [LYS] | D:8 [A] | E:199 [LYS] | F:8 [A] | ❌ 4WAN_E:199 no longer at interface |
C:204 [LEU] | D:9 [C] | E:204 [LEU] | F:9 [C] | ❌ 4WAN_E:204 no longer at interface |
C:245 [PRO] | D:3 [U] | E:245 [PRO] | F:3 [U] | ❌ 4WAN_C:245 no longer at interface |
Properties of this pair
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
---|---|---|---|---|---|---|---|---|---|---|---|---|
Eukaryotic type KH-domain (KH-domain type I) | 0.94 | 0.68 | 0.89 | 0.94 | 0.45 | 0.97 | 0.89 | 0.96 | 0.96 | 0.50 | 0.62 |
Other pairs involving 4WAN_C_D or 4WAN_E_F
Total number of entries: 3
Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
---|---|---|---|---|---|---|---|---|
1EC6_A_D | 4WAN_E_F | 0.80 | 0.65 | 1.88 | 0.31 | Eukaryotic type KH-domain (KH-domain type I) | compare | |
1EC6_A_D | 4WAN_C_D | 0.71 | 0.65 | 2.65 | 0.33 | Eukaryotic type KH-domain (KH-domain type I) | compare | |
4WAN_C_D | 4WAN_E_F | 0.96 | 0.94 | 0.68 | 0.89 | Eukaryotic type KH-domain (KH-domain type I) | compare |