Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
Protein
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 1VQ8_I
|
1VQ8_0
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| I:72 [VAL] | 0:1164 [U] | 4.8 | 62.36 | |||
| I:73 [PRO] | 0:1164 [U] | 4.43 | 86.46 | |||
| I:74 [PRO] | 0:1163 [G] | 4.79 | 0:1183 [C] | 56.47 | ||
| I:74 [PRO] | 0:1164 [U] | 3.07 | 56.47 | |||
| I:75 [THR] | 0:1163 [G] | 3.44 | 0:1183 [C] | sugar:SC | 72.88 | |
| I:75 [THR] | 0:1164 [U] | 2.77 | 72.88 | |||
| I:76 [ALA] | 0:1164 [U] | 4.4 | 81.53 | |||
| I:76 [ALA] | 0:1166 [A] | 4.96 | 0:1180 [U] | 81.53 | ||
| I:76 [ALA] | 0:1167 [G] | 3.07 | 0:1179 [C] | 81.53 | ||
| I:77 [GLU] | 0:1167 [G] | 4.93 | 0:1179 [C] | 12.83 | ||
| I:80 [LYS] | 0:1167 [G] | 3.84 | 0:1179 [C] | 67.92 | ||
| I:80 [LYS] | 0:1168 [C] | 2.87 | 0:1178 [G] | 67.92 | ||
| I:86 [GLU] | 0:1168 [C] | 4.04 | 0:1178 [G] | 42.24 | ||
| I:87 [THR] | 0:1168 [C] | 3.3 | 0:1178 [G] | 80.68 | ||
| I:87 [THR] | 0:1169 [U] | 3.7 | 0:1177 [A] | 80.68 | ||
| I:88 [GLY] | 0:1167 [G] | 3.75 | 0:1179 [C] | 84.45 | ||
| I:88 [GLY] | 0:1168 [C] | 3.22 | 0:1178 [G] | 84.45 | ||
| I:89 [SER] | 0:1167 [G] | 3.86 | 0:1179 [C] | sugar:BB | 82.24 | |
| I:89 [SER] | 0:1168 [C] | 4.08 | 0:1178 [G] | 82.24 | ||
| I:90 [GLY] | 0:1167 [G] | 4.32 | 0:1179 [C] | 27.46 | ||
| I:90 [GLY] | 0:1168 [C] | 4.47 | 0:1178 [G] | 27.46 | ||
| I:90 [GLY] | 0:1180 [U] | 4.04 | 0:1166 [A] | 27.46 | ||
| I:91 [GLU] | 0:1180 [U] | 3.48 | 0:1166 [A] | 3.25 | ||
| I:92 [PRO] | 0:1180 [U] | 2.99 | 0:1166 [A] | 56.69 | ||
| I:92 [PRO] | 0:1181 [A] | 3.1 | 56.69 | |||
| I:93 [GLN] | 0:1181 [A] | 4.58 | 35.49 | |||
| I:93 [GLN] | 0:1182 [C] | 3.99 | 35.49 | |||
| I:94 [GLU] | 0:1180 [U] | 3.4 | 0:1166 [A] | sugar:SC | 0.0 | |
| I:94 [GLU] | 0:1181 [A] | 2.85 | 0.0 | |||
| I:112 [LYS] | 0:1163 [G] | 3.69 | 0:1183 [C] | 98.55 | ||
| I:112 [LYS] | 0:1164 [U] | 3.54 | 98.55 | |||
| I:115 [ASP] | 0:1162 [G] | 3.04 | 0:1184 [C] | sugar:BB | 47.46 | |
| I:115 [ASP] | 0:1163 [G] | 2.94 | 0:1183 [C] | 47.46 | ||
| I:115 [ASP] | 0:1164 [U] | 4.63 | 47.46 | |||
| I:116 [LEU] | 0:1162 [G] | 4.26 | 0:1184 [C] | 45.23 | ||
| I:116 [LEU] | 0:1163 [G] | 3.25 | 0:1183 [C] | 45.23 | ||
| I:117 [LEU] | 0:1161 [A] | 4.13 | 0:1185 [U] | 51.23 | ||
| I:117 [LEU] | 0:1162 [G] | 3.69 | 0:1184 [C] | 51.23 | ||
| I:117 [LEU] | 0:1185 [U] | 3.25 | 0:1161 [A] | 51.23 | ||
| I:117 [LEU] | 0:1186 [C] | 3.84 | 0:1190 [G] | 51.23 | ||
| I:118 [SER] | 0:1185 [U] | 3.06 | 0:1161 [A] | 57.54 | ||
| I:118 [SER] | 0:1186 [C] | 4.6 | 0:1190 [G] | 57.54 | ||
| I:119 [TYR] | 0:1186 [C] | 3.3 | 0:1190 [G] | 1.98 | ||
| I:119 [TYR] | 0:1187 [U] | 3.52 | 1.98 | |||
| I:123 [ASN] | 0:1185 [U] | 3.59 | 0:1161 [A] | 50.31 | ||
| I:123 [ASN] | 0:1186 [C] | 3.51 | 0:1190 [G] | 50.31 | ||
| I:126 [LYS] | 0:1184 [C] | 3.45 | 0:1162 [G] | 63.35 | ||
| I:126 [LYS] | 0:1185 [U] | 2.92 | 0:1161 [A] | 63.35 | ||
| I:127 [GLU] | 0:1162 [G] | 3.17 | 0:1184 [C] | base:SC | 72.33 | |
| I:127 [GLU] | 0:1163 [G] | 3.59 | 0:1183 [C] | base:BB | 72.33 | |
| I:127 [GLU] | 0:1184 [C] | 4.27 | 0:1162 [G] | 72.33 | ||
| I:127 [GLU] | 0:1185 [U] | 3.52 | 0:1161 [A] | 72.33 | ||
| I:129 [VAL] | 0:1183 [C] | 4.69 | 0:1163 [G] | 41.05 | ||
| I:129 [VAL] | 0:1184 [C] | 4.84 | 0:1162 [G] | 41.05 | ||
| I:130 [GLY] | 0:1163 [G] | 4.65 | 0:1183 [C] | 95.46 | ||
| I:130 [GLY] | 0:1183 [C] | 3.85 | 0:1163 [G] | 95.46 | ||
| I:130 [GLY] | 0:1192 [A] | 3.47 | base:BB | 95.46 | ||
| I:131 [THR] | 0:1164 [U] | 2.76 | base:SC | 92.85 | ||
| I:131 [THR] | 0:1166 [A] | 4.08 | 0:1180 [U] | 92.85 | ||
| I:131 [THR] | 0:1183 [C] | 4.78 | 0:1163 [G] | 92.85 | ||
| I:131 [THR] | 0:1192 [A] | 4.63 | 92.85 | |||
| I:134 [SER] | 0:1167 [G] | 4.79 | 0:1179 [C] | 98.05 | ||
| I:134 [SER] | 0:1181 [A] | 3.93 | 98.05 | |||
| I:134 [SER] | 0:1192 [A] | 2.91 | base:SC | 98.05 | ||
| I:135 [LEU] | 0:1167 [G] | 3.01 | 0:1179 [C] | 79.88 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group36 | 1VQ8_I_0 | I: 50s ribosomal protein l11p, Haloarcula marismortui (natural) 0: 23s ribosomal RNA, Haloarcula marismortui (natural) | P14122 | Ribosomal protein L11, C-terminal domain | Archaeal large subunit ribosomal RNA | ✔ |
|
Interologs
Total number of interologs for this interface: 2
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 1VQ8_I_0 | 7O7Y_Bt_B5 | 0.48 | 0.93 | 4.18 | 0.2 | Ribosomal protein L11, C-terminal domain | compare | |
| 1VQ8_I_0 | 1YHQ_I_0 | 0.98 | 1.0 | 0.46 | 1.0 | Ribosomal protein L11, C-terminal domain | Archaeal large subunit ribosomal RNA | compare |