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All interfaces > All interologs > Interface groups > group36 > 1YHQ_I_0

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
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Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

1YHQ_I
1YHQ_0
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
I:68 [PRO] 0:1164 [U] 4.38 86.46
I:69 [PRO] 0:1164 [U] 2.85 56.47
I:70 [THR] 0:1163 [G] 3.56 0:1183 [C] 72.88
I:70 [THR] 0:1164 [U] 2.87 72.88
I:71 [ALA] 0:1166 [A] 4.46 0:1180 [U] 81.53
I:71 [ALA] 0:1167 [G] 2.92 0:1179 [C] 81.53
I:75 [LYS] 0:1167 [G] 4.08 0:1179 [C] 67.92
I:75 [LYS] 0:1168 [C] 3.33 0:1178 [G] 67.92
I:81 [GLU] 0:1168 [C] 4.32 0:1178 [G] 42.24
I:82 [THR] 0:1168 [C] 3.49 0:1178 [G] 80.68
I:82 [THR] 0:1169 [U] 4.26 0:1177 [A] 80.68
I:83 [GLY] 0:1167 [G] 3.78 0:1179 [C] 84.45
I:83 [GLY] 0:1168 [C] 3.48 0:1178 [G] 84.45
I:84 [SER] 0:1167 [G] 3.82 0:1179 [C] 82.24
I:84 [SER] 0:1168 [C] 4.3 0:1178 [G] 82.24
I:85 [GLY] 0:1167 [G] 4.03 0:1179 [C] 27.46
I:85 [GLY] 0:1168 [C] 4.33 0:1178 [G] 27.46
I:85 [GLY] 0:1180 [U] 3.73 0:1166 [A] 27.46
I:86 [GLU] 0:1180 [U] 3.52 0:1166 [A] 3.25
I:87 [PRO] 0:1180 [U] 3.3 0:1166 [A] 56.69
I:87 [PRO] 0:1181 [A] 3.37 56.69
I:88 [GLN] 0:1182 [C] 4.36 35.49
I:89 [GLU] 0:1180 [U] 3.91 0:1166 [A] sugar:SC 0.0
I:89 [GLU] 0:1181 [A] 3.36 0.0
I:107 [LYS] 0:1163 [G] 3.8 0:1183 [C] 98.55
I:107 [LYS] 0:1164 [U] 3.22 98.55
I:110 [ASP] 0:1162 [G] 3.0 0:1184 [C] sugar:BB 47.46
I:110 [ASP] 0:1163 [G] 2.81 0:1183 [C] 47.46
I:110 [ASP] 0:1164 [U] 3.74 47.46
I:111 [LEU] 0:1162 [G] 4.47 0:1184 [C] 45.23
I:111 [LEU] 0:1163 [G] 3.27 0:1183 [C] 45.23
I:112 [LEU] 0:1161 [A] 3.57 0:1185 [U] 51.23
I:112 [LEU] 0:1162 [G] 3.41 0:1184 [C] 51.23
I:112 [LEU] 0:1185 [U] 3.64 0:1161 [A] 51.23
I:112 [LEU] 0:1186 [C] 3.85 0:1190 [G] 51.23
I:113 [SER] 0:1185 [U] 3.01 0:1161 [A] 57.54
I:113 [SER] 0:1186 [C] 4.05 0:1190 [G] 57.54
I:114 [TYR] 0:1186 [C] 3.44 0:1190 [G] 1.98
I:114 [TYR] 0:1187 [U] 3.74 1.98
I:118 [ASN] 0:1185 [U] 3.78 0:1161 [A] 50.31
I:118 [ASN] 0:1186 [C] 3.38 0:1190 [G] 50.31
I:121 [LYS] 0:1184 [C] 3.57 0:1162 [G] 63.35
I:121 [LYS] 0:1185 [U] 2.86 0:1161 [A] 63.35
I:122 [GLU] 0:1162 [G] 3.25 0:1184 [C] base:SC 72.33
I:122 [GLU] 0:1163 [G] 3.91 0:1183 [C] base:BB 72.33
I:122 [GLU] 0:1184 [C] 3.97 0:1162 [G] 72.33
I:122 [GLU] 0:1185 [U] 3.42 0:1161 [A] 72.33
I:124 [VAL] 0:1183 [C] 4.84 0:1163 [G] 41.05
I:125 [GLY] 0:1163 [G] 4.86 0:1183 [C] 95.46
I:125 [GLY] 0:1164 [U] 4.53 95.46
I:125 [GLY] 0:1183 [C] 3.1 0:1163 [G] 95.46
I:125 [GLY] 0:1192 [A] 3.29 base:BB 95.46
I:126 [THR] 0:1163 [G] 4.76 0:1183 [C] 92.85
I:126 [THR] 0:1164 [U] 2.73 base:SC 92.85
I:126 [THR] 0:1166 [A] 3.74 0:1180 [U] 92.85
I:126 [THR] 0:1192 [A] 4.9 92.85
I:129 [SER] 0:1181 [A] 4.36 98.05
I:129 [SER] 0:1192 [A] 3.06 base:SC 98.05
I:130 [LEU] 0:1167 [G] 3.15 0:1179 [C] 79.88

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group36 1YHQ_I_0 I: 50s ribosomal protein l11p, Haloarcula marismortui (natural) 0: 23s ribosomal RNA, Haloarcula marismortui (natural) P14122 Ribosomal protein L11, C-terminal domain Archaeal large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 2

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1YHQ_I_0 7O7Y_Bt_B5 0.47 0.93 4.06 0.21 Ribosomal protein L11, C-terminal domain compare
1VQ8_I_0 1YHQ_I_0 0.98 1.0 0.46 1.0 Ribosomal protein L11, C-terminal domain Archaeal large subunit ribosomal RNA compare