RNAprotDB

All interfaces > All interologs > Interface groups > group36 > 7O7Y_Bt_B5

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

7O7Y_Bt
7O7Y_B5
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
Bt:14 [TYR] B5:1914 [G] 3.3 3.01
Bt:15 [LEU] B5:1914 [G] 3.61 38.06
Bt:16 [ARG] B5:1913 [U] 4.92 B5:1941 [A] 77.06
Bt:16 [ARG] B5:1914 [G] 3.52 sugar:SC 77.06
Bt:16 [ARG] B5:1915 [G] 4.95 B5:1929 [A] 77.06
Bt:16 [ARG] B5:1916 [C] 4.04 B5:1928 [G] 77.06
Bt:25 [THR] B5:1920 [G] 3.21 52.13
Bt:26 [SER] B5:1920 [G] 4.94 80.3
Bt:31 [LYS] B5:1914 [G] 3.68 base:SC 83.43
Bt:57 [ARG] B5:1916 [C] 4.72 B5:1928 [G] 58.91
Bt:57 [ARG] B5:1917 [C] 4.01 B5:1927 [G] 58.91
Bt:57 [ARG] B5:1918 [A] 2.54 B5:1926 [C] base:SC 58.91
Bt:57 [ARG] B5:1919 [U] 2.29 base:SC 58.91
Bt:59 [THR] B5:1914 [G] 4.7 76.4
Bt:75 [PRO] B5:1913 [U] 4.24 B5:1941 [A] 93.19
Bt:76 [SER] B5:1912 [G] 4.96 B5:1932 [C] 74.25
Bt:76 [SER] B5:1913 [U] 3.23 B5:1941 [A] 74.25
Bt:77 [ALA] B5:1912 [G] 3.33 B5:1932 [C] 79.34
Bt:77 [ALA] B5:1913 [U] 3.07 B5:1941 [A] 79.34
Bt:78 [SER] B5:1913 [U] 4.17 B5:1941 [A] 82.92
Bt:78 [SER] B5:1915 [G] 3.51 B5:1929 [A] 82.92
Bt:78 [SER] B5:1916 [C] 2.71 B5:1928 [G] 82.92
Bt:82 [ILE] B5:1916 [C] 4.16 B5:1928 [G] 47.21
Bt:92 [ARG] B5:1918 [A] 3.44 B5:1926 [C] 70.52
Bt:92 [ARG] B5:1919 [U] 2.33 70.52
Bt:95 [GLN] B5:1918 [A] 3.57 B5:1926 [C] 1.72
Bt:96 [LYS] B5:1917 [C] 4.81 B5:1927 [G] 53.79
Bt:96 [LYS] B5:1918 [A] 3.53 B5:1926 [C] 53.79
Bt:96 [LYS] B5:1919 [U] 2.85 53.79
Bt:97 [ASN] B5:1917 [C] 3.39 B5:1927 [G] sugar:SC 51.4
Bt:97 [ASN] B5:1918 [A] 2.94 B5:1926 [C] 51.4
Bt:98 [ILE] B5:1917 [C] 3.07 B5:1927 [G] 27.23
Bt:98 [ILE] B5:1918 [A] 3.49 B5:1926 [C] 27.23
Bt:100 [HIS] B5:1916 [C] 3.67 B5:1928 [G] 60.32
Bt:100 [HIS] B5:1917 [C] 3.04 B5:1927 [G] 60.32
Bt:116 [MET] B5:1912 [G] 3.89 B5:1932 [C] 70.94
Bt:119 [ARG] B5:1912 [G] 3.32 B5:1932 [C] 34.03
Bt:119 [ARG] B5:1913 [U] 2.73 B5:1941 [A] 34.03
Bt:121 [LEU] B5:1911 [G] 3.29 B5:1933 [C] 30.88
Bt:121 [LEU] B5:1912 [G] 4.69 B5:1932 [C] 30.88
Bt:121 [LEU] B5:1934 [G] 3.59 B5:1910 [C] 30.88
Bt:121 [LEU] B5:1935 [C] 4.48 B5:1939 [G] 30.88
Bt:122 [ALA] B5:1934 [G] 3.21 B5:1910 [C] 82.73
Bt:122 [ALA] B5:1935 [C] 4.63 B5:1939 [G] 82.73
Bt:123 [ARG] B5:1934 [G] 4.22 B5:1910 [C] 41.62
Bt:123 [ARG] B5:1935 [C] 3.0 B5:1939 [G] 41.62
Bt:123 [ARG] B5:1936 [U] 2.34 41.62
Bt:127 [GLY] B5:1933 [C] 3.83 B5:1911 [G] sugar:BB 62.05
Bt:127 [GLY] B5:1934 [G] 4.0 B5:1910 [C] 62.05
Bt:130 [LYS] B5:1933 [C] 3.2 B5:1911 [G] 73.43
Bt:130 [LYS] B5:1934 [G] 2.4 B5:1910 [C] 73.43
Bt:131 [GLU] B5:1911 [G] 3.35 B5:1933 [C] 81.17
Bt:131 [GLU] B5:1912 [G] 3.14 B5:1932 [C] base:BB 81.17
Bt:131 [GLU] B5:1932 [C] 4.97 B5:1912 [G] 81.17
Bt:131 [GLU] B5:1933 [C] 3.12 B5:1911 [G] 81.17
Bt:131 [GLU] B5:1934 [G] 3.58 B5:1910 [C] sugar:SC 81.17
Bt:133 [LEU] B5:1932 [C] 4.66 B5:1912 [G] 77.77
Bt:134 [GLY] B5:1912 [G] 4.0 B5:1932 [C] 95.28
Bt:134 [GLY] B5:1913 [U] 4.69 B5:1941 [A] 95.28
Bt:134 [GLY] B5:1932 [C] 3.18 B5:1912 [G] 95.28
Bt:134 [GLY] B5:1941 [A] 2.89 B5:1913 [U] base:BB 95.28
Bt:135 [THR] B5:1912 [G] 3.49 B5:1932 [C] 98.88
Bt:135 [THR] B5:1913 [U] 2.7 B5:1941 [A] base:SC 98.88
Bt:135 [THR] B5:1915 [G] 3.96 B5:1929 [A] 98.88
Bt:135 [THR] B5:1932 [C] 4.09 B5:1912 [G] 98.88
Bt:135 [THR] B5:1941 [A] 4.22 B5:1913 [U] 98.88
Bt:137 [GLN] B5:1930 [A] 3.55 33.86
Bt:137 [GLN] B5:1931 [U] 3.33 33.86
Bt:137 [GLN] B5:1932 [C] 3.1 B5:1912 [G] sugar:SC 33.86
Bt:137 [GLN] B5:1941 [A] 3.53 B5:1913 [U] 33.86
Bt:138 [SER] B5:1913 [U] 4.96 B5:1941 [A] 99.0
Bt:138 [SER] B5:1915 [G] 2.36 B5:1929 [A] base:BB, base:SC, base:SC 99.0
Bt:138 [SER] B5:1916 [C] 3.44 B5:1928 [G] 99.0
Bt:138 [SER] B5:1930 [A] 4.85 99.0
Bt:138 [SER] B5:1941 [A] 3.31 B5:1913 [U] 99.0
Bt:139 [VAL] B5:1915 [G] 4.94 B5:1929 [A] 46.06
Bt:139 [VAL] B5:1916 [C] 2.85 B5:1928 [G] sugar:BB 46.06
Bt:140 [GLY] B5:1916 [C] 4.96 B5:1928 [G] 90.13
Bt:149 [HIS] B5:1930 [A] 4.87 56.32
Bt:149 [HIS] B5:1931 [U] 3.25 56.32
Bt:149 [HIS] B5:1932 [C] 4.63 B5:1912 [G] 56.32
Bt:152 [ILE] B5:1932 [C] 4.41 B5:1912 [G] 53.56
Bt:152 [ILE] B5:1933 [C] 3.61 B5:1911 [G] 53.56

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group36 7O7Y_Bt_B5 Bt: Ribosomal protein l12, Oryctolagus cuniculus (natural) B5: 28s rRNA, Oryctolagus cuniculus (natural) G1SMR7 Ribosomal protein L11, C-terminal domain & Ribosomal protein L11/L12e N-terminal domain Eukaryotic large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 2

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
1VQ8_I_0 7O7Y_Bt_B5 0.48 0.93 4.18 0.2 Ribosomal protein L11, C-terminal domain compare
1YHQ_I_0 7O7Y_Bt_B5 0.47 0.93 4.06 0.21 Ribosomal protein L11, C-terminal domain compare