Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
StructureStructure (with hetatm)
Chain
Chainbow
View
Focus on
InterfaceRNA
Protein
All
Show chains
Interface
show interface as licoriceCommon contacts -
1WSU_A
|
1WSU_E
|
2PJP_A
|
2PJP_B
|
Conserved?
|
---|---|---|---|---|
A:627 [ASP] | E:23 [G] | A:601 [ASN] | B:23 [G] | ✔ |
A:596 [ALA] | E:22 [G] | A:570 [ALA] | B:22 [G] | ✔ |
A:596 [ALA] | E:23 [G] | A:570 [ALA] | B:23 [G] | ✔ |
A:604 [SER] | E:21 [C] | A:578 [VAL] | B:21 [A] | ✔ |
A:629 [ARG] | E:23 [G] | A:603 [HIS] | B:23 [G] | ✔ |
A:607 [LYS] | E:19 [G] | A:581 [LYS] | B:19 [G] | ✔ |
A:607 [LYS] | E:20 [C] | A:581 [LYS] | B:20 [C] | ✔ |
A:607 [LYS] | E:21 [C] | A:581 [LYS] | B:21 [A] | ✔ |
A:610 [LEU] | E:23 [G] | A:584 [ILE] | B:23 [G] | ✔ |
A:610 [LEU] | E:24 [U] | A:584 [ILE] | B:24 [U] | ✔ |
A:614 [GLU] | E:23 [G] | A:588 [GLU] | B:23 [G] | ✔ |
A:605 [SER] | E:20 [C] | A:579 [GLY] | B:20 [C] | ✔ |
A:605 [SER] | E:21 [C] | A:579 [GLY] | B:21 [A] | ✔ |
A:599 [ARG] | E:21 [C] | A:573 [ARG] | B:21 [A] | ✔ |
A:599 [ARG] | E:22 [G] | A:573 [ARG] | B:22 [G] | ✔ |
A:624 [ARG] | E:23 [G] | A:598 [ARG] | B:23 [G] | ✔ |
A:595 [LEU] | E:23 [G] | A:569 [ALA] | B:23 [G] | ✔ |
A:606 [ARG] | E:21 [C] | A:580 [ARG] | B:21 [A] | ✔ |
A:606 [ARG] | E:22 [G] | A:580 [ARG] | B:22 [G] | ✔ |
A:606 [ARG] | E:23 [G] | A:580 [ARG] | B:23 [G] | ✔ |
A:606 [ARG] | E:24 [U] | A:580 [ARG] | B:24 [U] | ✔ |
A:599 [ARG] | E:20 [C] | A:573 [ARG] | B:20 [C] | ❌ 2PJP_A_B |
A:595 [LEU] | E:24 [U] | A:569 [ALA] | B:24 [U] | ❌ 2PJP_A_B |
A:604 [SER] | E:20 [C] | A:578 [VAL] | B:20 [C] | ❌ 1WSU_A_E |
A:606 [ARG] | E:20 [C] | A:580 [ARG] | B:20 [C] | ❌ 1WSU_A_E |
A:624 [ARG] | E:24 [U] | A:598 [ARG] | B:24 [U] | ❌ 1WSU_A_E |
A:535 [SER] | E:18 [U] | A:508 [TRP] | B:18 [U] | ❌ 1WSU_A:535, 1WSU_E:18 no longer at interface |
A:607 [LYS] | E:18 [U] | A:581 [LYS] | B:18 [U] | ❌ 1WSU_E:18 no longer at interface |
A:608 [TYR] | E:20 [C] | A:582 [LEU] | B:20 [C] | ❌ 2PJP_A:582 no longer at interface |
A:570 [PHE] | E:19 [G] | A:543 [ARG] | B:19 [G] | ❌ 1WSU_A:570 no longer at interface |
A:617 [ASP] | E:23 [G] | A:591 [ASP] | B:23 [G] | ❌ 1WSU_A:617 no longer at interface |
A:626 [GLY] | E:23 [G] | A:600 [GLY] | B:23 [G] | ❌ 1WSU_A:626 no longer at interface |
Properties of this pair
Common ECOD label(s) |
Common RFAM label(s) |
Interface TM-score |
Interface RMSD |
Percentage identity |
Protein TM-score |
RNA TM-score |
Protein coverage |
RNA coverage |
Percentage conservation |
Apolar conservation |
H-bond conservation |
Percentage switching out |
---|---|---|---|---|---|---|---|---|---|---|---|---|
winged | 0.81 | 1.3 | 0.46 | 0.85 | 0.37 | 0.92 | 1.0 | 0.92 | 0.92 | 0.67 | 0.55 |
Other pairs involving 1WSU_A_E or 2PJP_A_B
Total number of entries: 3
Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
---|---|---|---|---|---|---|---|---|
2PJP_A_B | 2UWM_A_C | 0.94 | 0.82 | 1.21 | 0.46 | winged | compare | |
1WSU_A_E | 2PJP_A_B | 0.92 | 0.81 | 1.3 | 0.46 | winged | compare | |
1WSU_A_E | 2UWM_A_C | 0.99 | 0.97 | 0.19 | 1.0 | winged | compare |