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All interfaces > All interologs > Interface groups > group37 > 2PJP_A_B

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

2PJP_A
2PJP_B
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
A:508 [TRP] B:17 [U] 3.42 base/AA stacks 69.87
A:508 [TRP] B:18 [U] 3.96 B:29 [A] 69.87
A:509 [VAL] B:17 [U] 3.54 84.76
A:510 [ARG] B:17 [U] 3.03 base:BB, sugar:SC base/AA stacks 80.72
A:520 [GLU] B:17 [U] 4.19 72.71
A:524 [ARG] B:17 [U] 4.2 79.62
A:541 [LYS] B:17 [U] 4.47 44.26
A:542 [ASP] B:17 [U] 3.16 base:SC 93.91
A:543 [ARG] B:19 [G] 4.34 B:28 [C] 91.36
A:569 [ALA] B:23 [G] 4.47 84.48
A:570 [ALA] B:22 [G] 4.61 B:25 [C] 84.28
A:570 [ALA] B:23 [G] 4.65 84.28
A:573 [ARG] B:21 [A] 2.73 B:26 [U] 98.22
A:573 [ARG] B:22 [G] 2.68 B:25 [C] 98.22
A:578 [VAL] B:20 [C] 4.53 B:27 [G] 71.97
A:578 [VAL] B:21 [A] 4.53 B:26 [U] 71.97
A:579 [GLY] B:20 [C] 3.08 B:27 [G] 97.63
A:579 [GLY] B:21 [A] 3.61 B:26 [U] 97.63
A:580 [ARG] B:20 [C] 4.96 B:27 [G] 99.0
A:580 [ARG] B:21 [A] 2.84 B:26 [U] 99.0
A:580 [ARG] B:22 [G] 2.93 B:25 [C] base/AA stacks 99.0
A:580 [ARG] B:23 [G] 2.72 sugar:SC 99.0
A:580 [ARG] B:24 [U] 2.91 base:SC, base:SC 99.0
A:581 [LYS] B:17 [U] 4.73 93.67
A:581 [LYS] B:18 [U] 2.61 B:29 [A] 93.67
A:581 [LYS] B:19 [G] 2.88 B:28 [C] 93.67
A:581 [LYS] B:20 [C] 4.68 B:27 [G] 93.67
A:581 [LYS] B:21 [A] 4.55 B:26 [U] 93.67
A:584 [ILE] B:23 [G] 3.49 93.58
A:584 [ILE] B:24 [U] 3.07 93.58
A:588 [GLU] B:23 [G] 2.6 base:SC, base:SC 98.33
A:591 [ASP] B:23 [G] 4.95 98.65
A:598 [ARG] B:23 [G] 2.84 sugar:SC base/AA stacks 94.93
A:598 [ARG] B:24 [U] 4.93 94.93
A:600 [GLY] B:23 [G] 4.61 72.65
A:601 [ASN] B:23 [G] 3.27 80.96
A:603 [HIS] B:23 [G] 2.79 base:SC 92.32

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group37 2PJP_A_B A: Selenocysteine-specific elongation factor, Escherichia coli (genetically engineered) B: Secis RNA P14081 winged ✘

Interologs

Total number of interologs for this interface: 2

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
2PJP_A_B 2UWM_A_C 0.94 0.82 1.21 0.46 winged compare
1WSU_A_E 2PJP_A_B 0.92 0.81 1.3 0.46 winged compare