Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
Protein
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 2UWM_A
|
2UWM_C
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| A:595 [LEU] | C:23 [G] | 3.99 | 78.98 | |||
| A:595 [LEU] | C:24 [U] | 3.64 | 78.98 | |||
| A:596 [ALA] | C:22 [G] | 3.64 | C:25 [C] | 86.17 | ||
| A:596 [ALA] | C:23 [G] | 3.56 | 86.17 | |||
| A:599 [ARG] | C:20 [C] | 4.95 | C:28 [G] | 94.3 | ||
| A:599 [ARG] | C:21 [C] | 2.78 | C:27 [G] | 94.3 | ||
| A:599 [ARG] | C:22 [G] | 2.76 | C:25 [C] | 94.3 | ||
| A:604 [SER] | C:21 [C] | 3.84 | C:27 [G] | 85.59 | ||
| A:605 [SER] | C:19 [G] | 4.99 | C:29 [C] | 94.72 | ||
| A:605 [SER] | C:20 [C] | 2.52 | C:28 [G] | 94.72 | ||
| A:605 [SER] | C:21 [C] | 3.47 | C:27 [G] | 94.72 | ||
| A:606 [ARG] | C:21 [C] | 3.0 | C:27 [G] | 99.0 | ||
| A:606 [ARG] | C:22 [G] | 2.84 | C:25 [C] | base/AA stacks | 99.0 | |
| A:606 [ARG] | C:23 [G] | 3.16 | sugar:SC | 99.0 | ||
| A:606 [ARG] | C:24 [U] | 3.05 | base:SC, base:SC | 99.0 | ||
| A:607 [LYS] | C:18 [U] | 4.91 | C:30 [A] | 94.23 | ||
| A:607 [LYS] | C:19 [G] | 2.55 | C:29 [C] | 94.23 | ||
| A:607 [LYS] | C:20 [C] | 3.47 | C:28 [G] | 94.23 | ||
| A:607 [LYS] | C:21 [C] | 4.49 | C:27 [G] | 94.23 | ||
| A:608 [TYR] | C:20 [C] | 3.88 | C:28 [G] | 72.91 | ||
| A:610 [LEU] | C:23 [G] | 3.3 | 83.75 | |||
| A:610 [LEU] | C:24 [U] | 4.01 | 83.75 | |||
| A:614 [GLU] | C:23 [G] | 4.41 | 95.74 | |||
| A:624 [ARG] | C:23 [G] | 3.54 | base/AA stacks | 98.89 | ||
| A:627 [ASP] | C:23 [G] | 3.36 | base/AA stacks | 92.46 | ||
| A:629 [ARG] | C:23 [G] | 2.74 | base:SC, base:SC | 99.0 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group37 | 2UWM_A_C | A: Selenocysteine-specific elongation factor, Moorella thermoacetica (genetically engineered) C: Moorella thermoacetica (synthetic) | Q2RFK4 | winged | ✘ |
|
Interologs
Total number of interologs for this interface: 2
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 2PJP_A_B | 2UWM_A_C | 0.94 | 0.82 | 1.21 | 0.46 | winged | compare | |
| 1WSU_A_E | 2UWM_A_C | 0.99 | 0.97 | 0.19 | 1.0 | winged | compare |