Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 2NUF_A
|
2NUF_C
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| A:27 [HIS] | C:18 [G] | 3.19 | C:9 [U] | 97.53 | ||
| A:27 [HIS] | C:19 [U] | 3.0 | C:8 [A] | 97.53 | ||
| A:28 [VAL] | C:17 [A] | 4.6 | C:10 [U] | 58.19 | ||
| A:28 [VAL] | C:18 [G] | 3.69 | C:9 [U] | 58.19 | ||
| A:28 [VAL] | C:19 [U] | 4.74 | C:8 [A] | 58.19 | ||
| A:29 [SER] | C:18 [G] | 3.77 | C:9 [U] | 97.9 | ||
| A:40 [GLU] | C:2 [A] | 4.41 | C:25 [U] | 98.54 | ||
| A:41 [PHE] | C:2 [A] | 4.85 | C:25 [U] | 90.48 | ||
| A:44 [ASP] | C:1 [C] | 4.28 | C:26 [G] | 99.0 | ||
| A:97 [ARG] | C:10 [U] | 3.64 | C:17 [A] | 46.25 | ||
| A:97 [ARG] | C:11 [C] | 3.45 | C:16 [G] | 46.25 | ||
| A:101 [ASN] | C:19 [U] | 3.46 | C:8 [A] | 53.88 | ||
| A:101 [ASN] | C:20 [G] | 3.51 | C:7 [C] | 53.88 | ||
| A:103 [THR] | C:20 [G] | 4.07 | C:7 [C] | 76.64 | ||
| A:104 [ILE] | C:19 [U] | 4.47 | C:8 [A] | 77.09 | ||
| A:179 [HIS] | C:6 [U] | 4.28 | C:21 [G] | 50.48 | ||
| A:179 [HIS] | C:7 [C] | 3.37 | C:20 [G] | 50.48 | ||
| A:179 [HIS] | C:21 [G] | 3.15 | C:6 [U] | base:BB | 50.48 | |
| A:179 [HIS] | C:22 [C] | 4.1 | C:5 [G] | 50.48 | ||
| A:180 [HIS] | C:7 [C] | 2.88 | C:20 [G] | sugar:SC | 83.77 | |
| A:180 [HIS] | C:8 [A] | 3.51 | C:19 [U] | 83.77 | ||
| A:180 [HIS] | C:20 [G] | 3.37 | C:7 [C] | 83.77 | ||
| A:180 [HIS] | C:21 [G] | 3.33 | C:6 [U] | 83.77 | ||
| A:181 [LYS] | C:21 [G] | 4.57 | C:6 [U] | 38.44 | ||
| A:182 [LYS] | C:21 [G] | 4.96 | C:6 [U] | 57.53 | ||
| A:182 [LYS] | C:22 [C] | 3.81 | C:5 [G] | 57.53 | ||
| A:184 [PHE] | C:22 [C] | 3.6 | C:5 [G] | 83.69 | ||
| A:184 [PHE] | C:23 [C] | 3.94 | C:4 [G] | 83.69 | ||
| A:200 [LYS] | C:21 [G] | 4.07 | C:6 [U] | 46.12 | ||
| A:200 [LYS] | C:22 [C] | 3.17 | C:5 [G] | 46.12 | ||
| A:201 [SER] | C:22 [C] | 3.83 | C:5 [G] | 89.84 | ||
| A:201 [SER] | C:23 [C] | 3.58 | C:4 [G] | 89.84 | ||
| A:202 [LYS] | C:22 [C] | 4.65 | C:5 [G] | 83.75 | ||
| A:202 [LYS] | C:23 [C] | 3.03 | C:4 [G] | 83.75 | ||
| A:202 [LYS] | C:24 [U] | 2.8 | C:3 [A] | 83.75 | ||
| A:203 [LYS] | C:23 [C] | 4.59 | C:4 [G] | 87.78 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group38 | 2NUF_A_C | A: Ribonuclease iii, Aquifex aeolicus (genetically engineered) C: 28-mer | O67082 | RNase III catalytic domain-like & dsRNA-binding domain-like | ✘ |
|
Interologs
Total number of interologs for this interface: 2
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 2EZ6_A_C | 2NUF_A_C | 0.90 | 1.0 | 0.85 | 0.92 | RNase III catalytic domain-like & dsRNA-binding domain-like | compare | |
| 2NUF_A_C | 2NUG_A_C,E | 0.45 | 0.79 | 2.81 | 0.08 | RNase III catalytic domain-like & dsRNA-binding domain-like | compare |