RNAprotDB

Interface analysis

2NUF_A	2NUF_C	2NUG_A	2NUG_C,E	Conserved?
A:180 [HIS]	C:7 [C]	A:179 [HIS]	E:36 [U]	✔
A:179 [HIS]	C:7 [C]	A:178 [PRO]	E:36 [U]	✔
A:40 [GLU]	C:2 [A]	A:40 [GLU]	E:30 [G]	✔
A:44 [ASP]	C:1 [C]	A:44 [ASP]	E:29 [A]	✔
A:179 [HIS]	C:6 [U]	A:178 [PRO]	E:35 [C]	❌ 2NUG_A_C,E
A:41 [PHE]	C:2 [A]	A:41 [PHE]	E:30 [G]	❌ 2NUG_A_C,E
A:180 [HIS]	C:6 [U]	A:179 [HIS]	E:35 [C]	❌ 2NUF_A_C
A:40 [GLU]	C:1 [C]	A:40 [GLU]	E:29 [A]	❌ 2NUF_A_C
A:41 [PHE]	C:1 [C]	A:41 [PHE]	E:29 [A]	❌ 2NUF_A_C
A:97 [ARG]	C:10 [U]	A:97 [ARG]	E:38 [G]	❌ 2NUG_A:97 no longer at interface
A:97 [ARG]	C:11 [C]	A:97 [ARG]	E:39 [C]	❌ 2NUG_A:97 no longer at interface
A:107 [ASP]	C:1 [C]	A:107 [ASP]	E:29 [A]	❌ 2NUF_A:107 no longer at interface
A:110 [GLU]	C:1 [C]	A:110 [GLU]	E:29 [A]	❌ 2NUF_A:110 no longer at interface
A:96 [LYS]	C:11 [C]	A:96 [LYS]	E:39 [C]	❌ 2NUF_A:96 no longer at interface
A:96 [LYS]	C:10 [U]	A:96 [LYS]	E:38 [G]	❌ 2NUF_A:96 no longer at interface

Export the table of contacts

Common ECOD label(s)	Common RFAM label(s)	Interface TM-score	Interface RMSD	Percentage identity	Protein TM-score	RNA TM-score	Protein coverage	RNA coverage	Percentage conservation	Apolar conservation	H-bond conservation	Percentage switching out
RNase III catalytic domain-like & dsRNA-binding domain-like		0.79	2.81	0.08	0.82	0.52	0.79	0.46	0.45	0.26	0.25	0.55

Other pairs involving 2NUF_A_C or 2NUG_A_C,E

Interface 1	Interface 2	Percentage conservation	Interface TM-score	Interface RMSD	Percentage identity	Common ECOD label(s)	Common RFAM label(s)	Explore both interfaces
2NUF_A_C	2NUG_A_C,E	0.45	0.79	2.81	0.08	RNase III catalytic domain-like & dsRNA-binding domain-like		compare
2EZ6_A_C	2NUF_A_C	0.90	1.0	0.85	0.92	RNase III catalytic domain-like & dsRNA-binding domain-like		compare

Interface 1

Interface 2

Percentage conservation

Interface TM-score

Interface RMSD

Percentage identity

Common ECOD label(s)

Common RFAM label(s)

Explore both interfaces

0.45