Interface analysis
Style
Protein
CartoonLicorice
Surface
RNA
CartoonLicorice
Surface
Color
ChainChain (with hetatm)
Chainbow
Hydrophobicity Electrostatics (surface only) Conservation*
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InterfaceRNA
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Interface
show as licoriceshow Accessibility
Rim - Core
Contacts -
| 2NUG_A
|
2NUG_C,E
|
Distance
|
Base Pair
|
Hbond nuc:res
|
Base Stacking
|
Residue conservation
|
|---|---|---|---|---|---|---|
| A:27 [HIS] | C:2 [A] | 3.23 | E:37 [U] | 98.95 | ||
| A:27 [HIS] | C:3 [A] | 3.01 | E:36 [U] | 98.95 | ||
| A:28 [VAL] | C:2 [A] | 3.96 | E:37 [U] | 60.59 | ||
| A:29 [SER] | C:2 [A] | 3.72 | E:37 [U] | 97.9 | ||
| A:32 [LYS] | C:2 [A] | 4.32 | E:37 [U] | 53.11 | ||
| A:36 [TYR] | C:3 [A] | 4.84 | E:36 [U] | 81.44 | ||
| A:37 [GLU] | C:3 [A] | 4.64 | E:36 [U] | 90.5 | ||
| A:40 [GLU] | E:29 [A] | 2.89 | C:10 [U] | 98.78 | ||
| A:40 [GLU] | E:30 [G] | 4.25 | C:9 [U] | 98.78 | ||
| A:41 [PHE] | E:29 [A] | 3.78 | C:10 [U] | 93.35 | ||
| A:44 [ASP] | E:29 [A] | 2.88 | C:10 [U] | 99.0 | ||
| A:96 [LYS] | E:38 [G] | 4.76 | 67.52 | |||
| A:96 [LYS] | E:39 [C] | 3.9 | 67.52 | |||
| A:99 [LYS] | C:2 [A] | 2.63 | E:37 [U] | sugar:SC | 44.98 | |
| A:99 [LYS] | C:3 [A] | 3.28 | E:36 [U] | sugar:SC | 44.98 | |
| A:101 [ASN] | C:3 [A] | 3.21 | E:36 [U] | 66.52 | ||
| A:101 [ASN] | C:4 [G] | 3.87 | E:35 [C] | 66.52 | ||
| A:103 [THR] | C:3 [A] | 4.69 | E:36 [U] | 78.45 | ||
| A:103 [THR] | C:4 [G] | 2.58 | E:35 [C] | 78.45 | ||
| A:104 [ILE] | C:3 [A] | 4.1 | E:36 [U] | 74.11 | ||
| A:107 [ASP] | E:29 [A] | 4.69 | C:10 [U] | 91.43 | ||
| A:110 [GLU] | E:29 [A] | 3.15 | C:10 [U] | 99.0 | ||
| A:178 [PRO] | E:36 [U] | 4.9 | C:3 [A] | 65.47 | ||
| A:179 [HIS] | C:4 [G] | 2.97 | E:35 [C] | base:BB | 49.58 | |
| A:179 [HIS] | C:5 [G] | 4.21 | E:34 [C] | 49.58 | ||
| A:179 [HIS] | E:35 [C] | 2.64 | C:4 [G] | sugar:SC | 49.58 | |
| A:179 [HIS] | E:36 [U] | 3.25 | C:3 [A] | sugar:SC | 49.58 | |
| A:180 [HIS] | C:3 [A] | 4.56 | E:36 [U] | 84.99 | ||
| A:180 [HIS] | C:4 [G] | 3.02 | E:35 [C] | 84.99 | ||
| A:180 [HIS] | E:36 [U] | 2.87 | C:3 [A] | sugar:SC | 84.99 | |
| A:180 [HIS] | E:37 [U] | 3.31 | C:2 [A] | 84.99 | ||
| A:181 [LYS] | C:4 [G] | 4.28 | E:35 [C] | 55.33 | ||
| A:182 [LYS] | C:4 [G] | 4.91 | E:35 [C] | 58.32 | ||
| A:182 [LYS] | C:5 [G] | 3.8 | E:34 [C] | 58.32 | ||
| A:184 [PHE] | C:5 [G] | 3.26 | E:34 [C] | 84.33 | ||
| A:184 [PHE] | C:6 [U] | 4.03 | E:33 [G] | 84.33 | ||
| A:200 [LYS] | C:5 [G] | 3.11 | E:34 [C] | 49.24 | ||
| A:201 [SER] | C:5 [G] | 3.91 | E:34 [C] | 89.68 | ||
| A:201 [SER] | C:6 [U] | 3.48 | E:33 [G] | 89.68 | ||
| A:202 [LYS] | C:5 [G] | 4.53 | E:34 [C] | 80.74 | ||
| A:202 [LYS] | C:6 [U] | 2.77 | E:33 [G] | 80.74 | ||
| A:202 [LYS] | C:7 [C] | 2.74 | E:32 [G] | 80.74 | ||
| A:203 [LYS] | C:6 [U] | 4.5 | E:33 [G] | 84.94 |
Export the table of contacts
*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)
Properties of this interface
| Interolog group ID | Structure ID |
Structure description |
UniProt ID |
ECOD label(s) |
RFAM label(s) |
Is ribosome? | RCSB PDB link |
|---|---|---|---|---|---|---|---|
| group38 | 2NUG_A_C,E | A: Ribonuclease iii, Aquifex aeolicus (genetically engineered) C: N/A E: N/A | O67082 | RNase III catalytic domain-like & dsRNA-binding domain-like | ✘ |
|
Interologs
Total number of interologs for this interface: 1
| Interface 1 | Interface 2 |
Percentage conservation |
Interface TM-score |
Interface RMSD |
Percentage identity |
Common ECOD label(s) |
Common RFAM label(s) |
Explore both interfaces |
|---|---|---|---|---|---|---|---|---|
| 2NUF_A_C | 2NUG_A_C,E | 0.45 | 0.79 | 2.81 | 0.08 | RNase III catalytic domain-like & dsRNA-binding domain-like | compare |