RNAprotDB

Interface analysis

3HAX_C	3HAX_E	3LWR_B	3LWR_D	Conserved?
C:35 [PHE]	E:19 [C]	B:35 [PHE]	D:19 [G]	✔
C:41 [TYR]	E:21 [G]	B:41 [TYR]	D:21 [G]	✔
C:36 [SER]	E:19 [C]	B:36 [SER]	D:19 [G]	✔
C:36 [SER]	E:20 [G]	B:36 [SER]	D:20 [C]	✔
C:34 [ARG]	E:19 [C]	B:34 [ARG]	D:19 [G]	✔
C:34 [ARG]	E:33 [G]	B:34 [ARG]	D:31 [G]	✔
C:38 [GLU]	E:19 [C]	B:38 [GLU]	D:19 [G]	✔
C:38 [GLU]	E:20 [G]	B:38 [GLU]	D:20 [C]	✔
C:40 [PRO]	E:20 [G]	B:40 [PRO]	D:20 [C]	✔
C:40 [PRO]	E:21 [G]	B:40 [PRO]	D:21 [G]	✔
C:37 [PRO]	E:19 [C]	B:37 [PRO]	D:19 [G]	✔
C:34 [ARG]	E:20 [G]	B:34 [ARG]	D:20 [C]	❌ 3LWR_B_D
C:34 [ARG]	E:32 [U]	B:34 [ARG]	D:30 [U]	❌ 3LWR_D:30 no longer at interface
C:38 [GLU]	E:39 [G]	B:38 [GLU]	D:37 [C]	❌ 3LWR_D:37 no longer at interface
C:34 [ARG]	E:18 [C]	B:34 [ARG]	D:18 [C]	❌ 3HAX_E:18 no longer at interface

Export the table of contacts

Common ECOD label(s)	Common RFAM label(s)	Interface TM-score	Interface RMSD	Percentage identity	Protein TM-score	RNA TM-score	Protein coverage	RNA coverage	Percentage conservation	Apolar conservation	H-bond conservation	Percentage switching out
Nucleolar RNA-binding protein Nop10-like		0.94	0.67	0.40	0.98	0.8	1.0	0.8	0.87	0.76	0.40	0.75

Other pairs involving 3HAX_C_E or 3LWR_B_D

Interface 1	Interface 2	Percentage conservation	Interface TM-score	Interface RMSD	Percentage identity	Common ECOD label(s)	Common RFAM label(s)	Explore both interfaces
2HVY_C_E	3LWR_B_D	0.83	0.83	0.57	0.4	Nucleolar RNA-binding protein Nop10-like		compare
3HAX_C_E	3LWR_B_D	0.87	0.94	0.67	0.4	Nucleolar RNA-binding protein Nop10-like		compare

Interface 1

Interface 2

Percentage conservation

Interface TM-score

Interface RMSD

Percentage identity

Common ECOD label(s)

Common RFAM label(s)

Explore both interfaces

0.83