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All interfaces > All interologs > Interface groups > group39 > 3LWR_B_D

Interface analysis

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Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Interface

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Rim - Core

Contacts -

3LWR_B
3LWR_D
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
B:34 [ARG] D:18 [C] 4.03 D:38 [G] 75.36
B:34 [ARG] D:19 [G] 3.09 D:37 [C] 75.36
B:34 [ARG] D:31 [G] 4.99 D:25 [A] 75.36
B:35 [PHE] D:19 [G] 4.67 D:37 [C] 70.28
B:36 [SER] D:19 [G] 3.31 D:37 [C] 95.2
B:36 [SER] D:20 [C] 2.8 D:36 [G] 95.2
B:37 [PRO] D:19 [G] 3.49 D:37 [C] 79.04
B:38 [GLU] D:19 [G] 2.69 D:37 [C] sugar:SC 55.54
B:38 [GLU] D:20 [C] 3.19 D:36 [G] 55.54
B:40 [PRO] D:20 [C] 3.93 D:36 [G] 75.97
B:40 [PRO] D:21 [G] 3.7 D:35 [C] 75.97
B:41 [TYR] D:21 [G] 4.72 D:35 [C] 60.23

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group39 3LWR_B_D B: Ribosome biogenesis protein nop10, Pyrococcus furiosus (genetically engineered) D: H/aca RNA Q8U1R4 Nucleolar RNA-binding protein Nop10-like Pab160 RNA ✔

Interologs

Total number of interologs for this interface: 2

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
3HAX_C_E 3LWR_B_D 0.87 0.94 0.67 0.4 Nucleolar RNA-binding protein Nop10-like compare
2HVY_C_E 3LWR_B_D 0.83 0.83 0.57 0.4 Nucleolar RNA-binding protein Nop10-like compare