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All interfaces > All interologs > Interface groups > group40 > 3X1L_B_I

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

3X1L_B
3X1L_I
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
B:13 [LEU] I:4 [G] 3.64 77.91
B:14 [PHE] I:4 [G] 3.93 97.45
B:15 [ARG] I:3 [U] 2.98 98.57
B:15 [ARG] I:4 [G] 2.83 98.57
B:16 [GLU] I:3 [U] 3.04 94.02
B:17 [SER] I:3 [U] 3.3 87.51
B:18 [ARG] I:3 [U] 4.91 89.96
B:20 [PHE] I:4 [G] 4.99 97.45
B:20 [PHE] I:5 [A] 3.03 base:BB 97.45
B:20 [PHE] I:6 [A] 2.94 base:BB 97.45
B:20 [PHE] I:7 [A] 3.65 97.45
B:21 [ASP] I:4 [G] 4.1 63.06
B:21 [ASP] I:5 [A] 3.03 base:SC 63.06
B:21 [ASP] I:6 [A] 3.78 63.06
B:21 [ASP] I:7 [A] 4.35 63.06
B:22 [ALA] I:6 [A] 3.11 base:BB 91.44
B:22 [ALA] I:7 [A] 3.39 91.44
B:23 [GLY] I:7 [A] 4.43 91.74
B:36 [GLN] I:2 [U] 4.33 89.28
B:36 [GLN] I:3 [U] 3.31 89.28
B:37 [THR] I:2 [U] 3.32 99.0
B:37 [THR] I:3 [U] 2.76 99.0
B:40 [GLY] I:1 [A] 2.79 sugar:BB 97.5
B:40 [GLY] I:2 [U] 3.2 97.5
B:41 [ALA] I:1 [A] 4.91 98.9
B:41 [ALA] I:2 [U] 3.39 98.9
B:43 [ARG] I:1 [A] 3.32 97.05
B:43 [ARG] I:2 [U] 4.17 97.05
B:44 [THR] I:1 [A] 2.73 base:SC, sugar:SC 83.46
B:44 [THR] I:2 [U] 3.13 83.46
B:47 [PHE] I:1 [A] 3.54 base/AA stacks 65.69
B:48 [TYR] I:1 [A] 3.16 base:SC 4.36
B:55 [VAL] I:1 [A] 3.16 53.53
B:56 [GLY] I:1 [A] 3.41 77.1
B:57 [VAL] I:1 [A] 3.61 54.43
B:58 [GLY] I:1 [A] 3.17 61.24
B:59 [GLU] I:1 [A] 4.44 17.85
B:147 [ILE] I:9 [U] 3.48 J:31 [DA] 86.2
B:148 [GLY] I:9 [U] 3.3 J:31 [DA] 97.5
B:149 [ILE] I:7 [A] 2.58 sugar:BB 95.75
B:149 [ILE] I:8 [G] 3.15 95.75
B:149 [ILE] I:9 [U] 3.35 J:31 [DA] 95.75
B:149 [ILE] I:10 [U] 3.31 J:30 [DA] 95.75
B:150 [LYS] I:7 [A] 3.4 71.99
B:150 [LYS] I:8 [G] 3.63 71.99
B:151 [LEU] I:7 [A] 4.4 83.49
B:151 [LEU] I:8 [G] 2.84 83.49
B:151 [LEU] I:10 [U] 3.5 J:30 [DA] 83.49
B:156 [LYS] I:8 [G] 3.63 77.43
B:156 [LYS] I:10 [U] 3.24 J:30 [DA] 77.43
B:156 [LYS] I:11 [G] 2.9 J:29 [DC] 77.43
B:157 [VAL] I:10 [U] 4.41 J:30 [DA] 82.98
B:157 [VAL] I:11 [G] 3.74 J:29 [DC] 82.98
B:158 [VAL] I:9 [U] 4.61 J:31 [DA] 28.72
B:158 [VAL] I:10 [U] 3.25 J:30 [DA] 28.72
B:162 [MET] I:7 [A] 4.02 67.17
B:163 [LEU] I:7 [A] 4.47 86.44
B:163 [LEU] I:9 [U] 3.5 J:31 [DA] 86.44
B:164 [TYR] I:7 [A] 3.52 sugar:SC base/AA stacks 97.1
B:164 [TYR] I:9 [U] 4.33 J:31 [DA] 97.1
B:196 [THR] I:2 [U] 2.63 base:BB, base:SC 83.54
B:197 [LEU] I:2 [U] 3.7 90.59
B:198 [GLY] I:2 [U] 3.09 base:BB 97.3
B:198 [GLY] I:4 [G] 3.76 97.3
B:198 [GLY] I:5 [A] 3.9 97.3
B:199 [GLY] I:4 [G] 3.35 94.29
B:199 [GLY] I:5 [A] 3.33 94.29
B:200 [GLU] I:4 [G] 4.52 98.25
B:200 [GLU] I:5 [A] 2.76 98.25
B:200 [GLU] I:6 [A] 4.33 98.25
B:200 [GLU] I:7 [A] 4.93 98.25
B:201 [SER] I:5 [A] 2.78 87.94
B:201 [SER] I:6 [A] 2.7 87.94
B:267 [SER] I:3 [U] 2.79 base:SC, base:SC 94.24
B:268 [GLY] I:3 [U] 2.95 base:BB 97.62
B:269 [TRP] I:2 [U] 3.26 89.45
B:269 [TRP] I:3 [U] 3.04 89.45
B:269 [TRP] I:4 [G] 3.28 base/AA stacks 89.45
B:270 [ASP] I:2 [U] 3.8 97.07
B:271 [MET] I:1 [A] 3.49 60.39
B:271 [MET] I:2 [U] 2.96 60.39
B:271 [MET] I:4 [G] 4.8 60.39
B:272 [HIS] I:1 [A] 3.98 33.78
B:272 [HIS] I:2 [U] 4.46 33.78
B:276 [PRO] I:3 [U] 3.17 97.95
B:277 [LYS] I:2 [U] 2.63 96.37
B:277 [LYS] I:3 [U] 2.78 96.37

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group40 3X1L_B_I B: Crispr system cmr subunit cmr3, Pyrococcus furiosus dsm 3638 (genetically engineered) I: RNA (32-mer), Pyrococcus furiosus com1 (synthetic) Q8U1S7 CRISPR transcript (pre-crRNA) processing endoribonuclease-related ✘

Interologs

Total number of interologs for this interface: 2

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
3X1L_B_I 5H9F_J_L 0.48 0.54 2.63 0.12 compare
3X1L_B_I 6S8B_H_U,V 0.93 0.69 1.33 0.35 CRISPR transcript (pre-crRNA) processing endoribonuclease-related compare