RNAprotDB

All interfaces > All interologs > Interface groups > group40 > 5H9F_J_L

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

5H9F_J
5H9F_L
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
J:16 [TRP] L:2 [U] 3.24 0.0
J:17 [GLY] L:3 [A] 3.4 0.0
J:18 [GLN] L:3 [A] 3.46 0.0
J:19 [PRO] L:3 [A] 3.41 0.0
J:20 [THR] L:3 [A] 3.27 base:BB 0.0
J:25 [ARG] L:3 [A] 3.2 0.0
J:25 [ARG] L:4 [A] 2.99 0.0
J:26 [PRO] L:3 [A] 3.81 0.0
J:32 [THR] L:3 [A] 4.12 0.0
J:34 [SER] L:2 [U] 3.66 0.0
J:34 [SER] L:3 [A] 2.59 0.0
J:35 [GLY] L:2 [U] 3.36 0.0
J:35 [GLY] L:3 [A] 4.12 0.0
J:38 [GLY] L:1 [A] 3.6 0.0
J:38 [GLY] L:2 [U] 3.11 0.0
J:39 [LEU] L:2 [U] 3.5 0.0
J:41 [GLY] L:1 [A] 3.58 0.0
J:42 [ALA] L:1 [A] 3.5 0.0
J:42 [ALA] L:2 [U] 3.92 0.0
J:46 [ILE] L:1 [A] 3.19 0.0
J:47 [GLN] L:1 [A] 4.08 0.0
J:48 [ARG] L:1 [A] 3.84 0.0
J:48 [ARG] L:2 [U] 2.34 0.0
J:48 [ARG] L:4 [A] 3.18 base:SC 0.0
J:48 [ARG] L:5 [A] 3.51 0.0
J:54 [LEU] L:1 [A] 4.64 0.0
J:84 [ASP] L:9 [A] 4.9 N:32 [DT] 0.0
J:85 [TYR] L:9 [A] 3.21 N:32 [DT] 0.0
J:86 [HIS] L:7 [C] 2.61 sugar:SC base/AA stacks 0.0
J:86 [HIS] L:9 [A] 3.4 N:32 [DT] 0.0
J:87 [THR] L:7 [C] 3.48 sugar:BB 0.0
J:87 [THR] L:8 [G] 2.91 base:SC, base:SC 0.0
J:87 [THR] L:9 [A] 2.92 N:32 [DT] sugar:SC 0.0
J:88 [VAL] L:7 [C] 3.36 0.0
J:88 [VAL] L:8 [G] 3.33 0.0
J:89 [LEU] L:7 [C] 4.0 0.0
J:89 [LEU] L:8 [G] 2.32 0.0
J:92 [ARG] L:5 [A] 4.28 0.0
J:92 [ARG] L:6 [C] 2.21 base:SC, base:SC 0.0
J:103 [THR] L:8 [G] 3.89 0.0
J:103 [THR] L:9 [A] 4.43 N:32 [DT] 0.0
J:105 [GLN] L:9 [A] 4.15 N:32 [DT] 0.0
J:108 [ARG] L:4 [A] 4.62 0.0
J:108 [ARG] L:5 [A] 4.41 0.0
J:108 [ARG] L:7 [C] 2.83 base:SC, base:SC 0.0
J:142 [TYR] L:1 [A] 3.43 base/AA stacks 0.0
J:143 [THR] L:1 [A] 4.83 0.0
J:143 [THR] L:2 [U] 3.75 0.0
J:144 [PRO] L:2 [U] 3.46 0.0
J:145 [TYR] L:1 [A] 2.82 sugar:SC 0.0
J:145 [TYR] L:2 [U] 2.64 base:BB, base:BB base/AA stacks 0.0
J:145 [TYR] L:4 [A] 2.89 sugar:SC 0.0
J:145 [TYR] L:5 [A] 4.09 0.0
J:146 [LEU] L:2 [U] 4.28 0.0
J:147 [GLY] L:2 [U] 2.6 base:BB, sugar:BB 0.0
J:147 [GLY] L:4 [A] 3.21 0.0
J:147 [GLY] L:5 [A] 4.94 0.0
J:148 [ARG] L:2 [U] 4.72 0.0
J:148 [ARG] L:3 [A] 4.9 0.0
J:148 [ARG] L:4 [A] 2.71 0.0
J:148 [ARG] L:5 [A] 3.54 0.0
J:149 [ARG] L:1 [A] 3.32 0.0
J:149 [ARG] L:4 [A] 4.15 0.0
J:149 [ARG] L:5 [A] 2.77 0.0
J:149 [ARG] L:6 [C] 3.33 0.0
J:150 [SER] L:5 [A] 4.39 0.0
J:197 [ARG] L:3 [A] 3.02 base:BB 0.0
J:198 [ASP] L:3 [A] 4.52 0.0
J:206 [ARG] L:2 [U] 4.2 0.0
J:206 [ARG] L:3 [A] 2.71 sugar:SC 0.0
J:206 [ARG] L:4 [A] 3.49 base/AA stacks 0.0
J:208 [PHE] L:3 [A] 3.38 base/AA stacks 0.0

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group40 5H9F_J_L J: Crispr system cascade subunit casd, Escherichia coli (strain k12) (genetically engineered) L: crRNA (61-mer), Escherichia coli (genetically engineered) Q46898 CRISPR system Cas5 homologs ✘

Interologs

Total number of interologs for this interface: 1

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
3X1L_B_I 5H9F_J_L 0.48 0.54 2.63 0.12 compare