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All interfaces > All interologs > Interface groups > group40 > 6S8B_H_U,V

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Licorice
Surface

RNA

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Licorice
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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

6S8B_H
6S8B_U,V
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
H:13 [MET] V:49 [G] 4.51 U:45 [A] 69.91
H:14 [PHE] V:49 [G] 4.61 U:45 [A] 76.7
H:15 [ARG] V:48 [U] 3.37 98.08
H:15 [ARG] V:49 [G] 2.65 U:45 [A] 98.08
H:16 [SER] V:48 [U] 3.08 72.59
H:17 [GLN] V:48 [U] 3.16 base:BB 64.08
H:18 [GLY] V:48 [U] 4.45 96.14
H:19 [GLU] U:42 [A] 3.9 94.44
H:19 [GLU] U:43 [A] 4.05 V:51 [A] 94.44
H:19 [GLU] V:52 [A] 4.45 94.44
H:20 [PHE] U:42 [A] 3.66 96.04
H:38 [ARG] V:48 [U] 3.89 base:SC 91.11
H:40 [SER] V:47 [U] 4.21 94.63
H:40 [SER] V:48 [U] 2.52 94.63
H:41 [THR] V:47 [U] 3.38 98.85
H:41 [THR] V:48 [U] 2.87 98.85
H:43 [ALA] V:46 [A] 4.37 87.6
H:44 [GLY] V:46 [A] 2.58 sugar:BB 96.14
H:44 [GLY] V:47 [U] 3.24 96.14
H:45 [MET] V:46 [A] 4.72 80.01
H:45 [MET] V:47 [U] 3.53 80.01
H:47 [GLY] V:46 [A] 3.07 79.63
H:48 [TYR] V:46 [A] 2.85 base/AA stacks 89.48
H:48 [TYR] V:47 [U] 3.51 89.48
H:51 [PHE] V:46 [A] 3.25 base/AA stacks 68.82
H:53 [LYS] V:46 [A] 3.87 72.85
H:60 [TRP] V:46 [A] 3.47 90.87
H:60 [TRP] V:47 [U] 4.07 90.87
H:63 [ASP] V:46 [A] 4.41 15.95
H:64 [LEU] V:46 [A] 3.74 55.22
H:64 [LEU] V:47 [U] 4.19 55.22
H:67 [LEU] V:46 [A] 4.1 62.71
H:138 [ILE] V:54 [U] 3.57 U:40 [A] 82.26
H:139 [GLY] V:54 [U] 3.36 U:40 [A] 88.53
H:140 [ILE] U:40 [A] 4.07 V:54 [U] 96.43
H:140 [ILE] V:52 [A] 2.84 sugar:BB 96.43
H:140 [ILE] V:53 [G] 3.03 96.43
H:140 [ILE] V:54 [U] 3.44 U:40 [A] 96.43
H:140 [ILE] V:55 [U] 3.44 U:39 [A] 96.43
H:141 [SER] V:52 [A] 3.2 76.99
H:141 [SER] V:53 [G] 3.33 76.99
H:142 [ILE] V:52 [A] 4.3 82.72
H:142 [ILE] V:53 [G] 2.56 82.72
H:142 [ILE] V:55 [U] 3.67 U:39 [A] 82.72
H:144 [LYS] V:53 [G] 3.68 65.32
H:147 [ARG] V:53 [G] 3.23 base:SC 84.37
H:147 [ARG] V:55 [U] 2.86 U:39 [A] sugar:BB 84.37
H:147 [ARG] V:56 [C] 3.52 U:38 [G] 84.37
H:148 [THR] U:39 [A] 4.31 V:55 [U] 64.81
H:148 [THR] V:55 [U] 4.17 U:39 [A] 64.81
H:148 [THR] V:56 [C] 3.41 U:38 [G] sugar:SC 64.81
H:149 [VAL] U:39 [A] 3.49 V:55 [U] 80.29
H:149 [VAL] U:40 [A] 3.22 V:54 [U] 80.29
H:149 [VAL] V:55 [U] 3.48 U:39 [A] base:BB 80.29
H:150 [LYS] U:40 [A] 3.46 V:54 [U] 90.07
H:151 [GLU] U:40 [A] 3.34 V:54 [U] 97.62
H:151 [GLU] U:41 [A] 4.48 97.62
H:152 [HIS] U:40 [A] 3.08 V:54 [U] 81.36
H:152 [HIS] U:41 [A] 2.48 81.36
H:152 [HIS] U:42 [A] 3.27 81.36
H:152 [HIS] U:43 [A] 3.54 V:51 [A] 81.36
H:153 [TYR] U:40 [A] 4.96 V:54 [U] 78.04
H:153 [TYR] U:41 [A] 4.09 78.04
H:153 [TYR] U:43 [A] 2.46 V:51 [A] sugar:SC base/AA stacks 78.04
H:153 [TYR] U:44 [A] 4.43 V:50 [A] 78.04
H:153 [TYR] V:52 [A] 3.23 78.04
H:154 [LEU] U:40 [A] 3.31 V:54 [U] 91.72
H:154 [LEU] U:41 [A] 3.42 91.72
H:154 [LEU] V:54 [U] 4.17 U:40 [A] 91.72
H:155 [TYR] V:52 [A] 3.44 sugar:SC base/AA stacks 90.99
H:155 [TYR] V:54 [U] 3.88 U:40 [A] 90.99
H:187 [ASN] V:47 [U] 2.99 79.16
H:187 [ASN] V:50 [A] 3.94 U:44 [A] 79.16
H:188 [PHE] V:47 [U] 4.07 60.75
H:189 [GLY] V:47 [U] 3.44 96.04
H:189 [GLY] V:49 [G] 3.65 U:45 [A] 96.04
H:189 [GLY] V:50 [A] 4.66 U:44 [A] 96.04
H:190 [GLY] V:49 [G] 3.71 U:45 [A] 96.04
H:190 [GLY] V:50 [A] 2.78 U:44 [A] 96.04
H:191 [GLU] V:50 [A] 3.54 U:44 [A] 97.62
H:191 [GLU] V:51 [A] 3.24 U:43 [A] base:SC, base:SC 97.62
H:191 [GLU] V:52 [A] 3.88 97.62
H:192 [ASN] V:50 [A] 3.57 U:44 [A] 66.59
H:192 [ASN] V:51 [A] 3.84 U:43 [A] 66.59
H:246 [SER] V:48 [U] 4.23 85.36
H:247 [LEU] V:48 [U] 4.02 85.15
H:248 [GLY] V:48 [U] 3.04 96.04
H:249 [PHE] V:47 [U] 3.04 85.76
H:249 [PHE] V:48 [U] 2.61 85.76
H:249 [PHE] V:49 [G] 3.37 U:45 [A] base/AA stacks 85.76
H:250 [ASP] V:47 [U] 3.37 79.34
H:250 [ASP] V:48 [U] 4.84 79.34
H:251 [ILE] V:46 [A] 3.65 82.82
H:251 [ILE] V:47 [U] 2.75 82.82
H:251 [ILE] V:49 [G] 3.27 U:45 [A] 82.82
H:252 [ALA] V:46 [A] 3.89 59.79
H:252 [ALA] V:47 [U] 4.42 59.79
H:254 [THR] V:49 [G] 4.99 U:45 [A] 42.14
H:256 [ARG] V:48 [U] 3.41 97.98
H:256 [ARG] V:49 [G] 4.53 U:45 [A] 97.98
H:257 [LYS] V:46 [A] 4.64 86.31
H:257 [LYS] V:47 [U] 2.17 86.31
H:257 [LYS] V:48 [U] 3.53 86.31

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group40 6S8B_H_U,V H: Crispr-associated protein, cmr3 family, Sulfolobus islandicus (strain rey15a) (natural) U: Cognate target RNA (46-mer), Sulfolobus islandicus rey15a (natural) V: crRNA, Sulfolobus islandicus rey15a (natural) F0NDX1 CRISPR transcript (pre-crRNA) processing endoribonuclease-related ✘

Interologs

Total number of interologs for this interface: 1

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
3X1L_B_I 6S8B_H_U,V 0.93 0.69 1.33 0.35 CRISPR transcript (pre-crRNA) processing endoribonuclease-related compare