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All interfaces > All interologs > Interface groups > group42 > 4V9F_6_0

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Protein

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Licorice
Surface

RNA

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Licorice
Surface

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Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

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Rim - Core

Contacts -

4V9F_6
4V9F_0
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
6:10 [PHE] 0:1142 [C] 4.07 0:1221 [G] 59.22
6:12 [ALA] 0:1222 [A] 4.86 0:1141 [U] 43.98
6:13 [ARG] 0:1222 [A] 4.51 0:1141 [U] 51.3
6:13 [ARG] 0:1223 [G] 3.79 0:1140 [C] 51.3
6:17 [GLN] 0:1142 [C] 2.92 0:1221 [G] base:SC, sugar:SC 64.59
6:17 [GLN] 0:1143 [G] 3.14 0:1220 [U] sugar:SC 64.59
6:17 [GLN] 0:1221 [G] 3.44 0:1142 [C] 64.59
6:17 [GLN] 0:1222 [A] 4.82 0:1141 [U] 64.59
6:18 [GLN] 0:1142 [C] 3.75 0:1221 [G] 37.34
6:18 [GLN] 0:1143 [G] 3.9 0:1220 [U] 37.34
6:19 [PHE] 0:1142 [C] 3.38 0:1221 [G] 97.76
6:19 [PHE] 0:1143 [G] 3.39 0:1220 [U] 97.76
6:20 [GLU] 0:1142 [C] 4.31 0:1221 [G] 52.78
6:20 [GLU] 0:1143 [G] 3.38 0:1220 [U] 52.78
6:21 [LYS] 0:1141 [U] 4.32 0:1222 [A] 73.75
6:21 [LYS] 0:1142 [C] 3.12 0:1221 [G] 73.75
6:26 [PRO] 0:578 [C] 4.53 5.03
6:27 [ASN] 0:578 [C] 3.09 74.29
6:30 [VAL] 0:578 [C] 3.46 46.81
6:30 [VAL] 0:1112 [G] 4.9 0:1251 [C] 46.81
6:33 [GLU] 0:578 [C] 4.45 94.3
6:33 [GLU] 0:1112 [G] 4.99 0:1251 [C] 94.3
6:33 [GLU] 0:1252 [A] 4.2 0:1111 [U] 94.3
6:34 [ARG] 0:578 [C] 3.79 base:SC 67.87
6:34 [ARG] 0:1112 [G] 3.51 0:1251 [C] sugar:SC 67.87
6:34 [ARG] 0:1113 [G] 3.4 0:1250 [C] sugar:BB 67.87
6:36 [TYR] 0:1251 [C] 3.35 0:1112 [G] 64.39
6:37 [SER] 0:1112 [G] 2.88 0:1251 [C] base:SC 83.51
6:37 [SER] 0:1113 [G] 3.06 0:1250 [C] base:BB 83.51
6:37 [SER] 0:1250 [C] 4.77 0:1113 [G] 83.51
6:37 [SER] 0:1251 [C] 3.34 0:1112 [G] 83.51
6:38 [ASP] 0:1113 [G] 2.95 0:1250 [C] sugar:SC 45.83
6:38 [ASP] 0:1114 [A] 2.95 0:1249 [U] sugar:SC 45.83
6:39 [PHE] 0:1141 [U] 4.06 0:1222 [A] 57.81
6:39 [PHE] 0:1142 [C] 4.2 0:1221 [G] 57.81
6:40 [GLY] 0:1250 [C] 2.35 0:1113 [G] sugar:BB 99.0
6:40 [GLY] 0:1251 [C] 3.33 0:1112 [G] 99.0
6:41 [SER] 0:1113 [G] 3.65 0:1250 [C] 97.17
6:41 [SER] 0:1114 [A] 2.72 0:1249 [U] base:SC, sugar:SC 97.17
6:41 [SER] 0:1115 [U] 3.28 0:1248 [A] sugar:SC 97.17
6:41 [SER] 0:1224 [G] 3.41 0:1139 [U] sugar:BB 97.17
6:41 [SER] 0:1250 [C] 3.32 0:1113 [G] 97.17
6:41 [SER] 0:1251 [C] 4.26 0:1112 [G] 97.17
6:42 [GLN] 0:1114 [A] 3.22 0:1249 [U] 60.57
6:42 [GLN] 0:1115 [U] 4.12 0:1248 [A] 60.57
6:42 [GLN] 0:1140 [C] 3.78 0:1223 [G] 60.57
6:42 [GLN] 0:1141 [U] 3.57 0:1222 [A] 60.57
6:42 [GLN] 0:1223 [G] 3.47 0:1140 [C] base:BB 60.57
6:42 [GLN] 0:1224 [G] 2.99 0:1139 [U] sugar:BB 60.57
6:43 [HIS] 0:1141 [U] 2.91 0:1222 [A] base:SC 93.28
6:43 [HIS] 0:1142 [C] 3.66 0:1221 [G] 93.28
6:43 [HIS] 0:1223 [G] 3.64 0:1140 [C] sugar:BB 93.28
6:43 [HIS] 0:1224 [G] 3.54 0:1139 [U] 93.28
6:44 [ASN] 0:1224 [G] 3.98 0:1139 [U] 67.06
6:44 [ASN] 0:1225 [C] 4.18 0:1138 [G] 67.06
6:44 [ASN] 0:1250 [C] 3.36 0:1113 [G] 67.06
6:44 [ASN] 0:1251 [C] 4.62 0:1112 [G] 67.06
6:45 [LEU] 0:1250 [C] 4.56 0:1113 [G] 73.53
6:45 [LEU] 0:1251 [C] 3.33 0:1112 [G] 73.53
6:46 [LYS] 0:1251 [C] 3.13 0:1112 [G] 81.23
6:46 [LYS] 0:1252 [A] 3.61 0:1111 [U] 81.23
6:47 [ARG] 0:1112 [G] 4.6 0:1251 [C] 98.92
6:47 [ARG] 0:1251 [C] 2.56 0:1112 [G] sugar:SC 98.92
6:47 [ARG] 0:1252 [A] 2.59 0:1111 [U] sugar:SC 98.92
6:48 [THR] 0:1252 [A] 4.62 0:1111 [U] 40.59

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group42 4V9F_6_0 6: 50s ribosomal protein lx, Haloarcula marismortui (natural) 0: 23s ribosomal RNA, Haloarcula marismortui (natural) P14125 RplX-like Archaeal large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 2

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4V9F_6_0 6AZ3_R_1 0.65 0.72 2.27 0.15 RplX-like compare
4V9F_6_0 7O7Y_BS_B5 0.61 0.93 2.87 0.12 RplX-like compare