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All interfaces > All interologs > Interface groups > group42 > 4V9F_6_0 vs 7O7Y_BS_B5

Interface analysis


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Common contacts -

4V9F_6
4V9F_0
7O7Y_BS
7O7Y_B5
Conserved?
6:44 [ASN] 0:1224 [G] BS:118 [ARG] B5:1973 [G] ✔
6:44 [ASN] 0:1225 [C] BS:118 [ARG] B5:1974 [C] ✔
6:44 [ASN] 0:1250 [C] BS:118 [ARG] B5:1999 [G] ✔
6:41 [SER] 0:1113 [G] BS:115 [ALA] B5:1863 [C] ✔
6:41 [SER] 0:1114 [A] BS:115 [ALA] B5:1864 [G] ✔
6:41 [SER] 0:1115 [U] BS:115 [ALA] B5:1865 [C] ✔
6:41 [SER] 0:1224 [G] BS:115 [ALA] B5:1973 [G] ✔
6:41 [SER] 0:1250 [C] BS:115 [ALA] B5:1999 [G] ✔
6:41 [SER] 0:1251 [C] BS:115 [ALA] B5:2000 [U] ✔
6:43 [HIS] 0:1141 [U] BS:117 [HIS] B5:1890 [G] ✔
6:43 [HIS] 0:1142 [C] BS:117 [HIS] B5:1891 [G] ✔
6:43 [HIS] 0:1223 [G] BS:117 [HIS] B5:1972 [A] ✔
6:43 [HIS] 0:1224 [G] BS:117 [HIS] B5:1973 [G] ✔
6:40 [GLY] 0:1250 [C] BS:114 [GLY] B5:1999 [G] ✔
6:40 [GLY] 0:1251 [C] BS:114 [GLY] B5:2000 [U] ✔
6:17 [GLN] 0:1142 [C] BS:93 [MET] B5:1891 [G] ✔
6:17 [GLN] 0:1143 [G] BS:93 [MET] B5:1892 [U] ✔
6:36 [TYR] 0:1251 [C] BS:110 [TYR] B5:2000 [U] ✔
6:38 [ASP] 0:1114 [A] BS:112 [ASP] B5:1864 [G] ✔
6:18 [GLN] 0:1142 [C] BS:94 [TYR] B5:1891 [G] ✔
6:18 [GLN] 0:1143 [G] BS:94 [TYR] B5:1892 [U] ✔
6:45 [LEU] 0:1250 [C] BS:119 [ALA] B5:1999 [G] ✔
6:45 [LEU] 0:1251 [C] BS:119 [ALA] B5:2000 [U] ✔
6:46 [LYS] 0:1251 [C] BS:120 [ARG] B5:2000 [U] ✔
6:42 [GLN] 0:1114 [A] BS:116 [ARG] B5:1864 [G] ✔
6:42 [GLN] 0:1115 [U] BS:116 [ARG] B5:1865 [C] ✔
6:42 [GLN] 0:1140 [C] BS:116 [ARG] B5:1889 [U] ✔
6:42 [GLN] 0:1141 [U] BS:116 [ARG] B5:1890 [G] ✔
6:42 [GLN] 0:1224 [G] BS:116 [ARG] B5:1973 [G] ✔
6:47 [ARG] 0:1251 [C] BS:121 [ALA] B5:2000 [U] ✔
6:47 [ARG] 0:1252 [A] BS:121 [ALA] B5:2001 [C] ✔
6:19 [PHE] 0:1142 [C] BS:95 [ARG] B5:1891 [G] ✔
6:37 [SER] 0:1112 [G] BS:111 [ARG] B5:1862 [A] ✔
6:37 [SER] 0:1113 [G] BS:111 [ARG] B5:1863 [C] ✔
6:37 [SER] 0:1250 [C] BS:111 [ARG] B5:1999 [G] ✔
6:37 [SER] 0:1251 [C] BS:111 [ARG] B5:2000 [U] ✔
6:44 [ASN] 0:1251 [C] BS:118 [ARG] B5:2000 [U] ❌ 7O7Y_BS_B5
6:12 [ALA] 0:1222 [A] BS:84 [TYR] B5:1971 [U] ❌ 7O7Y_BS_B5
6:17 [GLN] 0:1222 [A] BS:93 [MET] B5:1971 [U] ❌ 7O7Y_BS_B5
6:38 [ASP] 0:1113 [G] BS:112 [ASP] B5:1863 [C] ❌ 7O7Y_BS_B5
6:46 [LYS] 0:1252 [A] BS:120 [ARG] B5:2001 [C] ❌ 7O7Y_BS_B5
6:42 [GLN] 0:1223 [G] BS:116 [ARG] B5:1972 [A] ❌ 7O7Y_BS_B5
6:47 [ARG] 0:1112 [G] BS:121 [ALA] B5:1862 [A] ❌ 7O7Y_BS_B5
6:19 [PHE] 0:1143 [G] BS:95 [ARG] B5:1892 [U] ❌ 7O7Y_BS_B5
6:37 [SER] 0:1252 [A] BS:111 [ARG] B5:2001 [C] ❌ 4V9F_6_0
6:44 [ASN] 0:1115 [U] BS:118 [ARG] B5:1865 [C] ❌ 4V9F_6_0
6:44 [ASN] 0:1114 [A] BS:118 [ARG] B5:1864 [G] ❌ 4V9F_6_0
6:46 [LYS] 0:1250 [C] BS:120 [ARG] B5:1999 [G] ❌ 4V9F_6_0
6:12 [ALA] 0:1141 [U] BS:84 [TYR] B5:1890 [G] ❌ 4V9F_6_0
6:12 [ALA] 0:1223 [G] BS:84 [TYR] B5:1972 [A] ❌ 4V9F_6_0
6:17 [GLN] 0:1141 [U] BS:93 [MET] B5:1890 [G] ❌ 4V9F_6_0
6:19 [PHE] 0:1141 [U] BS:95 [ARG] B5:1890 [G] ❌ 4V9F_6_0
6:17 [GLN] 0:1221 [G] BS:93 [MET] B5:1970 [C] ❌ 7O7Y_B5:1970 no longer at interface
6:34 [ARG] 0:578 [C] BS:108 [GLN] B5:836 [C] ❌ 7O7Y_BS:108, 7O7Y_B5:836 no longer at interface
6:33 [GLU] 0:578 [C] BS:107 [THR] B5:836 [C] ❌ 7O7Y_BS:107, 7O7Y_B5:836 no longer at interface
6:27 [ASN] 0:578 [C] BS:100 [LEU] B5:836 [C] ❌ 7O7Y_BS:100, 7O7Y_B5:836 no longer at interface
6:30 [VAL] 0:578 [C] BS:103 [ALA] B5:836 [C] ❌ 7O7Y_BS:103, 7O7Y_B5:836 no longer at interface
6:44 [ASN] 0:1249 [U] BS:118 [ARG] B5:1998 [C] ❌ 4V9F_0:1249 no longer at interface
6:39 [PHE] 0:1141 [U] BS:113 [MET] B5:1890 [G] ❌ 7O7Y_BS:113 no longer at interface
6:39 [PHE] 0:1142 [C] BS:113 [MET] B5:1891 [G] ❌ 7O7Y_BS:113 no longer at interface
6:21 [LYS] 0:1141 [U] BS:96 [GLU] B5:1890 [G] ❌ 7O7Y_BS:96 no longer at interface
6:21 [LYS] 0:1142 [C] BS:96 [GLU] B5:1891 [G] ❌ 7O7Y_BS:96 no longer at interface
6:34 [ARG] 0:1112 [G] BS:108 [GLN] B5:1862 [A] ❌ 7O7Y_BS:108 no longer at interface
6:34 [ARG] 0:1113 [G] BS:108 [GLN] B5:1863 [C] ❌ 7O7Y_BS:108 no longer at interface
6:13 [ARG] 0:1222 [A] BS:90 [THR] B5:1971 [U] ❌ 7O7Y_BS:90 no longer at interface
6:13 [ARG] 0:1223 [G] BS:90 [THR] B5:1972 [A] ❌ 7O7Y_BS:90 no longer at interface
6:33 [GLU] 0:1112 [G] BS:107 [THR] B5:1862 [A] ❌ 7O7Y_BS:107 no longer at interface
6:33 [GLU] 0:1252 [A] BS:107 [THR] B5:2001 [C] ❌ 7O7Y_BS:107 no longer at interface
6:48 [THR] 0:1252 [A] BS:122 [HIS] B5:2001 [C] ❌ 7O7Y_BS:122 no longer at interface
6:30 [VAL] 0:1112 [G] BS:103 [ALA] B5:1862 [A] ❌ 7O7Y_BS:103 no longer at interface
6:10 [PHE] 0:1142 [C] BS:82 [LEU] B5:1891 [G] ❌ 7O7Y_BS:82 no longer at interface
6:14 [ASP] 0:1222 [A] BS:91 [HIS] B5:1971 [U] ❌ 4V9F_6:14 no longer at interface
6:14 [ASP] 0:1223 [G] BS:91 [HIS] B5:1972 [A] ❌ 4V9F_6:14 no longer at interface
6:16 [PRO] 0:1142 [C] BS:92 [ASN] B5:1891 [G] ❌ 4V9F_6:16 no longer at interface
6:16 [PRO] 0:1143 [G] BS:92 [ASN] B5:1892 [U] ❌ 4V9F_6:16 no longer at interface

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Properties of this pair

Common ECOD label(s)
 Common RFAM label(s)
 Interface TM-score
 Interface RMSD
 Percentage identity
 Protein TM-score
 RNA TM-score
 Protein coverage
 RNA coverage
 Percentage conservation
 Apolar conservation
 H-bond conservation
 Percentage switching out
RplX-like 0.93 2.87 0.12 0.87 0.93 0.58 0.88 0.61 0.51 0.15 0.59


Other pairs involving 4V9F_6_0 or 7O7Y_BS_B5

Total number of entries: 3

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4V9F_6_0 6AZ3_R_1 0.65 0.72 2.27 0.15 RplX-like compare
6AZ3_R_1 7O7Y_BS_B5 0.44 0.92 2.42 0.2 RplX-like Eukaryotic large subunit ribosomal RNA compare
4V9F_6_0 7O7Y_BS_B5 0.61 0.93 2.87 0.12 RplX-like compare