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All interfaces > All interologs > Interface groups > group42 > 6AZ3_R_1

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Licorice
Surface

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Licorice
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Chain
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Hydrophobicity
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Conservation*

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Rim - Core

Contacts -

6AZ3_R
6AZ3_1
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
R:2 [VAL] 1:546 [G] 4.42 0.0
R:2 [VAL] 1:1243 [G] 3.52 1:1384 [C] 0.0
R:2 [VAL] 1:1386 [A] 4.48 1:1240 [U] 0.0
R:2 [VAL] 1:1389 [A] 4.39 0.0
R:2 [VAL] 1:1390 [G] 4.39 0.0
R:3 [LYS] 1:545 [A] 4.92 1:509 [U] 0.0
R:3 [LYS] 1:546 [G] 2.87 base:BB, sugar:SC 0.0
R:3 [LYS] 1:1390 [G] 3.23 0.0
R:3 [LYS] 1:1391 [U] 3.93 0.0
R:3 [LYS] 1:1392 [G] 2.59 0.0
R:4 [PRO] 1:546 [G] 2.65 base:BB 0.0
R:4 [PRO] 1:1390 [G] 3.43 0.0
R:5 [HIS] 1:546 [G] 4.73 0.0
R:5 [HIS] 1:1385 [A] 3.39 1:1241 [A] 0.0
R:5 [HIS] 1:1386 [A] 4.18 1:1240 [U] 0.0
R:7 [ARG] 1:546 [G] 3.18 0.0
R:7 [ARG] 1:547 [U] 2.68 1:508 [A] 0.0
R:8 [HIS] 1:512 [U] 3.78 0.0
R:9 [TYR] 1:547 [U] 3.78 1:508 [A] 0.0
R:9 [TYR] 1:548 [G] 2.35 1:507 [C] 0.0
R:10 [GLN] 1:512 [U] 2.82 base:SC 0.0
R:30 [GLU] 1:512 [U] 2.65 base:SC 0.0
R:35 [ASN] 1:548 [G] 4.63 1:507 [C] 0.0
R:36 [PHE] 1:548 [G] 3.23 1:507 [C] 0.0
R:36 [PHE] 1:549 [C] 4.97 1:506 [G] 0.0
R:56 [THR] 1:1154 [G] 4.68 0.0
R:64 [LYS] 1:509 [U] 4.75 1:545 [A] 0.0
R:64 [LYS] 1:510 [U] 4.13 1:544 [A] 0.0
R:65 [VAL] 1:511 [A] 4.38 0.0
R:65 [VAL] 1:547 [U] 3.36 1:508 [A] 0.0
R:66 [VAL] 1:511 [A] 3.68 0.0
R:66 [VAL] 1:512 [U] 3.76 0.0
R:67 [LYS] 1:510 [U] 2.95 1:544 [A] base:SC, sugar:SC 0.0
R:67 [LYS] 1:511 [A] 2.93 0.0
R:67 [LYS] 1:512 [U] 4.43 0.0
R:67 [LYS] 1:513 [C] 3.9 1:538 [G] 0.0
R:67 [LYS] 1:540 [A] 3.37 0.0
R:67 [LYS] 1:544 [A] 4.46 1:510 [U] 0.0
R:68 [ASP] 1:512 [U] 4.66 0.0
R:68 [ASP] 1:513 [C] 3.34 1:538 [G] 0.0
R:68 [ASP] 1:540 [A] 4.22 0.0
R:68 [ASP] 1:546 [G] 3.31 0.0
R:68 [ASP] 1:1390 [G] 3.0 base:SC 0.0
R:69 [ALA] 1:513 [C] 3.65 1:538 [G] 0.0
R:69 [ALA] 1:514 [C] 3.75 1:537 [G] 0.0
R:69 [ALA] 1:540 [A] 2.99 0.0
R:70 [LYS] 1:513 [C] 4.24 1:538 [G] 0.0
R:70 [LYS] 1:514 [C] 2.94 1:537 [G] 0.0
R:70 [LYS] 1:515 [U] 3.97 1:536 [G] 0.0
R:70 [LYS] 1:540 [A] 3.55 0.0
R:71 [LEU] 1:1390 [G] 3.53 0.0
R:72 [VAL] 1:530 [U] 4.0 1:521 [G] 0.0
R:73 [ALA] 1:530 [U] 4.13 1:521 [G] 0.0
R:74 [ARG] 1:530 [U] 3.2 1:521 [G] 0.0
R:74 [ARG] 1:531 [C] 3.12 1:520 [G] 0.0
R:75 [ASN] 1:530 [U] 4.09 1:521 [G] 0.0
R:82 [TYR] 1:1356 [G] 3.83 1:1273 [U] sugar:SC 0.0
R:86 [ARG] 1:1356 [G] 3.29 1:1273 [U] 0.0
R:86 [ARG] 1:1357 [G] 4.75 1:1272 [U] 0.0
R:87 [CYS] 1:1355 [C] 3.02 1:1274 [G] 0.0
R:87 [CYS] 1:1356 [G] 3.71 1:1273 [U] 0.0
R:90 [THR] 1:1275 [G] 4.13 1:1354 [C] 0.0
R:91 [ARG] 1:1275 [G] 4.32 1:1354 [C] 0.0
R:91 [ARG] 1:1276 [U] 3.37 1:1353 [A] 0.0
R:91 [ARG] 1:1277 [G] 4.76 1:1352 [C] 0.0
R:92 [MET] 1:1274 [G] 4.92 1:1355 [C] 0.0
R:92 [MET] 1:1275 [G] 3.22 1:1354 [C] 0.0
R:92 [MET] 1:1276 [U] 3.38 1:1353 [A] 0.0
R:93 [VAL] 1:1275 [G] 4.2 1:1354 [C] 0.0
R:93 [VAL] 1:1276 [U] 3.28 1:1353 [A] 0.0
R:94 [LYS] 1:1274 [G] 3.59 1:1355 [C] 0.0
R:94 [LYS] 1:1275 [G] 3.56 1:1354 [C] 0.0
R:98 [ASP] 1:1390 [G] 4.19 0.0
R:99 [VAL] 1:1390 [G] 3.57 0.0
R:100 [SER] 1:1390 [G] 3.1 base:SC, base:SC 0.0
R:101 [LYS] 1:512 [U] 3.54 base:SC 0.0
R:103 [GLY] 1:1390 [G] 4.24 0.0
R:109 [TYR] 1:1384 [C] 3.31 1:1243 [G] 0.0
R:110 [HIS] 1:1243 [G] 3.22 1:1384 [C] base:SC 0.0
R:110 [HIS] 1:1244 [G] 2.69 1:1383 [C] base:BB 0.0
R:110 [HIS] 1:1245 [G] 4.83 1:1382 [C] 0.0
R:110 [HIS] 1:1383 [C] 4.8 1:1244 [G] 0.0
R:110 [HIS] 1:1384 [C] 3.07 1:1243 [G] base:SC, sugar:SC 0.0
R:110 [HIS] 1:1385 [A] 3.19 1:1241 [A] sugar:SC 0.0
R:111 [ASP] 1:1244 [G] 4.91 1:1383 [C] 0.0
R:111 [ASP] 1:1245 [G] 4.42 1:1382 [C] 0.0
R:113 [ALA] 1:1244 [G] 4.48 1:1383 [C] 0.0
R:113 [ALA] 1:1383 [C] 2.54 1:1244 [G] sugar:BB 0.0
R:113 [ALA] 1:1384 [C] 3.45 1:1243 [G] 0.0
R:114 [SER] 1:1244 [G] 4.0 1:1383 [C] 0.0
R:114 [SER] 1:1245 [G] 2.45 1:1382 [C] sugar:SC 0.0
R:114 [SER] 1:1246 [C] 4.51 1:1381 [G] 0.0
R:114 [SER] 1:1357 [G] 3.48 1:1272 [U] 0.0
R:114 [SER] 1:1383 [C] 3.62 1:1244 [G] 0.0
R:115 [ARG] 1:1245 [G] 3.16 1:1382 [C] 0.0
R:115 [ARG] 1:1246 [C] 3.54 1:1381 [G] 0.0
R:115 [ARG] 1:1273 [U] 3.49 1:1356 [G] 0.0
R:115 [ARG] 1:1274 [G] 2.99 1:1355 [C] 0.0
R:115 [ARG] 1:1356 [G] 2.96 1:1273 [U] base:BB 0.0
R:115 [ARG] 1:1357 [G] 3.2 1:1272 [U] 0.0
R:116 [HIS] 1:1274 [G] 3.07 1:1355 [C] base:SC 0.0
R:116 [HIS] 1:1275 [G] 4.46 1:1354 [C] 0.0
R:116 [HIS] 1:1356 [G] 3.73 1:1273 [U] 0.0
R:116 [HIS] 1:1357 [G] 4.01 1:1272 [U] 0.0
R:117 [ARG] 1:1245 [G] 4.0 1:1382 [C] 0.0
R:117 [ARG] 1:1246 [C] 4.25 1:1381 [G] 0.0
R:117 [ARG] 1:1357 [G] 2.7 1:1272 [U] sugar:SC 0.0
R:117 [ARG] 1:1358 [C] 4.12 1:1271 [G] 0.0
R:117 [ARG] 1:1382 [C] 2.91 1:1245 [G] base:SC, sugar:SC 0.0
R:117 [ARG] 1:1383 [C] 3.25 1:1244 [G] base/AA stacks 0.0
R:118 [ALA] 1:1383 [C] 4.83 1:1244 [G] 0.0
R:119 [ARG] 1:1383 [C] 2.86 1:1244 [G] 0.0
R:119 [ARG] 1:1384 [C] 2.9 1:1243 [G] 0.0
R:120 [TYR] 1:1385 [A] 4.95 1:1241 [A] 0.0
R:130 [SER] 1:530 [U] 4.94 1:521 [G] 0.0
R:130 [SER] 1:531 [C] 2.82 1:520 [G] 0.0
R:130 [SER] 1:532 [C] 4.2 1:519 [G] 0.0
R:131 [ILE] 1:530 [U] 3.94 1:521 [G] 0.0
R:131 [ILE] 1:531 [C] 4.06 1:520 [G] 0.0
R:132 [PRO] 1:530 [U] 3.43 1:521 [G] 0.0
R:132 [PRO] 1:531 [C] 3.46 1:520 [G] 0.0
R:133 [ASP] 1:529 [A] 3.56 1:522 [G] 0.0
R:133 [ASP] 1:530 [U] 2.66 1:521 [G] base:BB 0.0
R:134 [HIS] 1:521 [G] 3.67 1:530 [U] 0.0
R:134 [HIS] 1:522 [G] 3.5 1:529 [A] 0.0
R:134 [HIS] 1:523 [G] 3.97 1:528 [A] 0.0
R:134 [HIS] 1:530 [U] 4.74 1:521 [G] 0.0
R:138 [HIS] 1:1275 [G] 3.8 1:1354 [C] 0.0
R:147 [PRO] 1:524 [U] 4.81 0.0
R:147 [PRO] 1:527 [A] 4.92 0.0
R:155 [GLN] 1:1378 [U] 3.16 0.0
R:156 [ARG] 1:1378 [U] 3.22 0.0
R:157 [ARG] 1:1239 [U] 4.79 1:1380 [A] 0.0
R:157 [ARG] 1:1378 [U] 2.35 sugar:SC 0.0
R:157 [ARG] 1:1379 [A] 3.92 1:1247 [U] 0.0
R:159 [LYS] 1:1239 [U] 4.72 1:1380 [A] 0.0
R:159 [LYS] 1:1240 [U] 2.51 1:1386 [A] 0.0
R:159 [LYS] 1:1241 [A] 2.99 1:1385 [A] 0.0
R:162 [ARG] 1:1238 [C] 2.75 0.0
R:162 [ARG] 1:1240 [U] 4.58 1:1386 [A] 0.0
R:165 [ARG] 1:1238 [C] 2.43 base:BB, sugar:SC base/AA stacks 0.0
R:166 [ALA] 1:1238 [C] 3.45 0.0
R:167 [ILE] 1:1238 [C] 3.68 0.0
R:179 [ALA] 1:1238 [C] 3.34 0.0

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group42 6AZ3_R_1 R: 60s ribosomal protein l18a, Leishmania donovani (natural) 1: rRNA alpha, Leishmania donovani (natural) A0A3Q8IT55 RplX-like Eukaryotic large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 2

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_R_1 7O7Y_BS_B5 0.44 0.92 2.42 0.2 RplX-like Eukaryotic large subunit ribosomal RNA compare
4V9F_6_0 6AZ3_R_1 0.65 0.72 2.27 0.15 RplX-like compare