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All interfaces > All interologs > Interface groups > group42 > 7O7Y_BS_B5

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Licorice
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RNA

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Licorice
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Chain
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Hydrophobicity
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Conservation*

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Rim - Core

Contacts -

7O7Y_BS
7O7Y_B5
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
BS:1 [MET] B5:2001 [C] 4.84 B5:1861 [G] 48.3
BS:2 [LYS] B5:2001 [C] 3.26 B5:1861 [G] 18.1
BS:2 [LYS] B5:2002 [G] 3.24 B5:1859 [C] 18.1
BS:3 [ALA] B5:2000 [U] 4.85 B5:1862 [A] 34.6
BS:3 [ALA] B5:2001 [C] 3.01 B5:1861 [G] 34.6
BS:4 [SER] B5:2001 [C] 3.3 B5:1861 [G] 5.8
BS:4 [SER] B5:2002 [G] 3.18 B5:1859 [C] 5.8
BS:5 [GLY] B5:2001 [C] 3.07 B5:1861 [G] sugar:BB 29.9
BS:5 [GLY] B5:2002 [G] 3.43 B5:1859 [C] 29.9
BS:8 [ARG] B5:839 [G] 3.1 B5:721 [C] 52.5
BS:8 [ARG] B5:840 [C] 3.81 B5:720 [G] 52.5
BS:15 [ARG] B5:1090 [U] 4.18 95.9
BS:63 [TYR] B5:723 [G] 2.61 30.0
BS:65 [GLY] B5:723 [G] 4.63 42.3
BS:66 [GLN] B5:723 [G] 2.83 base:BB, base:BB 60.6
BS:66 [GLN] B5:838 [C] 4.5 B5:725 [G] 60.6
BS:66 [GLN] B5:839 [G] 4.29 B5:721 [C] 60.6
BS:67 [VAL] B5:723 [G] 3.67 75.4
BS:68 [PHE] B5:722 [U] 4.31 B5:831 [A] 0.0
BS:68 [PHE] B5:723 [G] 2.83 base:BB base/AA stacks 0.0
BS:68 [PHE] B5:725 [G] 3.45 B5:838 [C] 0.0
BS:68 [PHE] B5:726 [A] 3.27 B5:837 [U] 0.0
BS:68 [PHE] B5:831 [A] 3.32 B5:722 [U] 0.0
BS:68 [PHE] B5:838 [C] 4.99 B5:725 [G] 0.0
BS:69 [GLU] B5:726 [A] 2.98 B5:837 [U] sugar:BB 83.6
BS:69 [GLU] B5:727 [A] 4.88 83.6
BS:70 [LYS] B5:723 [G] 3.06 base:SC 65.6
BS:70 [LYS] B5:726 [A] 3.75 B5:837 [U] 65.6
BS:70 [LYS] B5:727 [A] 3.32 65.6
BS:72 [PRO] B5:726 [A] 4.69 B5:837 [U] 50.8
BS:72 [PRO] B5:727 [A] 3.26 50.8
BS:72 [PRO] B5:837 [U] 4.47 B5:726 [A] 50.8
BS:73 [LEU] B5:727 [A] 3.95 16.4
BS:73 [LEU] B5:728 [G] 3.67 B5:828 [A] 16.4
BS:73 [LEU] B5:837 [U] 4.96 B5:726 [A] 16.4
BS:74 [ARG] B5:817 [C] 4.18 B5:739 [G] 9.7
BS:74 [ARG] B5:818 [C] 4.65 B5:738 [G] 9.7
BS:75 [VAL] B5:743 [G] 4.5 80.4
BS:84 [TYR] B5:1890 [G] 4.84 B5:1971 [U] 85.2
BS:84 [TYR] B5:1972 [A] 4.56 B5:1889 [U] 85.2
BS:86 [SER] B5:1972 [A] 3.82 B5:1889 [U] 92.4
BS:86 [SER] B5:1973 [G] 3.19 B5:1888 [U] 92.4
BS:87 [ARG] B5:1972 [A] 4.7 B5:1889 [U] 84.0
BS:87 [ARG] B5:1973 [G] 2.58 B5:1888 [U] 84.0
BS:87 [ARG] B5:1974 [C] 2.52 B5:1887 [G] 84.0
BS:88 [SER] B5:1971 [U] 4.88 B5:1890 [G] 71.5
BS:88 [SER] B5:1972 [A] 2.61 B5:1889 [U] 71.5
BS:88 [SER] B5:1973 [G] 4.51 B5:1888 [U] 71.5
BS:91 [HIS] B5:1971 [U] 3.22 B5:1890 [G] 77.3
BS:91 [HIS] B5:1972 [A] 3.6 B5:1889 [U] 77.3
BS:92 [ASN] B5:1891 [G] 3.44 B5:1970 [C] sugar:BB 93.1
BS:92 [ASN] B5:1892 [U] 3.25 B5:1969 [A] 93.1
BS:93 [MET] B5:1890 [G] 3.82 B5:1971 [U] 80.5
BS:93 [MET] B5:1891 [G] 3.32 B5:1970 [C] 80.5
BS:93 [MET] B5:1892 [U] 3.85 B5:1969 [A] 80.5
BS:94 [TYR] B5:1891 [G] 3.46 B5:1970 [C] 67.2
BS:94 [TYR] B5:1892 [U] 2.99 B5:1969 [A] 67.2
BS:95 [ARG] B5:1890 [G] 2.73 B5:1971 [U] sugar:SC, sugar:SC 82.5
BS:95 [ARG] B5:1891 [G] 3.58 B5:1970 [C] 82.5
BS:98 [ARG] B5:743 [G] 2.84 base:SC, base:SC 96.7
BS:110 [TYR] B5:2000 [U] 3.78 B5:1862 [A] 89.4
BS:111 [ARG] B5:1862 [A] 4.64 B5:2000 [U] 39.3
BS:111 [ARG] B5:1863 [C] 4.17 B5:1999 [G] 39.3
BS:111 [ARG] B5:1999 [G] 3.1 B5:1863 [C] base:BB 39.3
BS:111 [ARG] B5:2000 [U] 3.19 B5:1862 [A] sugar:SC 39.3
BS:111 [ARG] B5:2001 [C] 3.08 B5:1861 [G] 39.3
BS:112 [ASP] B5:1864 [G] 4.07 B5:1998 [C] 83.5
BS:114 [GLY] B5:1999 [G] 2.67 B5:1863 [C] sugar:BB 90.7
BS:114 [GLY] B5:2000 [U] 3.82 B5:1862 [A] 90.7
BS:115 [ALA] B5:1863 [C] 4.6 B5:1999 [G] 78.3
BS:115 [ALA] B5:1864 [G] 3.28 B5:1998 [C] base:BB 78.3
BS:115 [ALA] B5:1865 [C] 3.87 B5:1997 [G] 78.3
BS:115 [ALA] B5:1973 [G] 4.44 B5:1888 [U] 78.3
BS:115 [ALA] B5:1999 [G] 3.31 B5:1863 [C] 78.3
BS:115 [ALA] B5:2000 [U] 4.92 B5:1862 [A] 78.3
BS:116 [ARG] B5:1864 [G] 3.0 B5:1998 [C] 74.9
BS:116 [ARG] B5:1865 [C] 2.76 B5:1997 [G] 74.9
BS:116 [ARG] B5:1889 [U] 2.89 B5:1972 [A] sugar:SC 74.9
BS:116 [ARG] B5:1890 [G] 3.47 B5:1971 [U] 74.9
BS:116 [ARG] B5:1973 [G] 3.26 B5:1888 [U] 74.9
BS:117 [HIS] B5:1890 [G] 2.77 B5:1971 [U] sugar:SC 88.6
BS:117 [HIS] B5:1891 [G] 4.84 B5:1970 [C] 88.6
BS:117 [HIS] B5:1972 [A] 4.77 B5:1889 [U] 88.6
BS:117 [HIS] B5:1973 [G] 3.91 B5:1888 [U] 88.6
BS:118 [ARG] B5:1864 [G] 3.53 B5:1998 [C] 73.2
BS:118 [ARG] B5:1865 [C] 3.74 B5:1997 [G] 73.2
BS:118 [ARG] B5:1973 [G] 2.92 B5:1888 [U] sugar:SC 73.2
BS:118 [ARG] B5:1974 [C] 3.56 B5:1887 [G] sugar:SC 73.2
BS:118 [ARG] B5:1998 [C] 2.76 B5:1864 [G] base:SC 73.2
BS:118 [ARG] B5:1999 [G] 2.84 B5:1863 [C] sugar:SC 73.2
BS:119 [ALA] B5:1999 [G] 4.69 B5:1863 [C] 76.8
BS:119 [ALA] B5:2000 [U] 4.63 B5:1862 [A] 76.8
BS:120 [ARG] B5:1999 [G] 3.45 B5:1863 [C] 80.5
BS:120 [ARG] B5:2000 [U] 2.97 B5:1862 [A] 80.5
BS:121 [ALA] B5:2000 [U] 4.98 B5:1862 [A] 2.7
BS:121 [ALA] B5:2001 [C] 4.12 B5:1861 [G] 2.7
BS:134 [ALA] B5:743 [G] 3.25 51.7
BS:135 [ALA] B5:743 [G] 4.2 36.5
BS:138 [ARG] B5:1892 [U] 4.35 B5:1969 [A] 59.8
BS:138 [ARG] B5:1893 [U] 4.99 B5:1968 [A] 59.8
BS:139 [ARG] B5:1890 [G] 4.8 B5:1971 [U] 85.6
BS:139 [ARG] B5:1891 [G] 2.52 B5:1970 [C] 85.6
BS:139 [ARG] B5:1892 [U] 2.89 B5:1969 [A] 85.6
BS:145 [PHE] B5:743 [G] 3.71 60.5
BS:146 [HIS] B5:743 [G] 2.91 44.6
BS:147 [ASP] B5:743 [G] 2.83 base:BB 38.4
BS:148 [SER] B5:743 [G] 3.52 51.5
BS:148 [SER] B5:744 [G] 2.72 51.5
BS:148 [SER] B5:745 [U] 4.25 B5:812 [A] 51.5
BS:149 [ARG] B5:745 [U] 3.86 B5:812 [A] 47.2
BS:149 [ARG] B5:746 [G] 4.37 B5:809 [G] 47.2
BS:149 [ARG] B5:804 [C] 4.74 B5:751 [G] 47.2
BS:149 [ARG] B5:805 [G] 3.8 B5:750 [C] 47.2
BS:150 [ILE] B5:743 [G] 3.86 68.8
BS:155 [PRO] B5:4511 [A] 3.56 43.9
BS:156 [HIS] B5:1994 [G] 3.01 base:SC 65.7
BS:156 [HIS] B5:4510 [U] 3.26 sugar:SC 65.7
BS:156 [HIS] B5:4511 [A] 2.64 65.7
BS:157 [ARG] B5:4511 [A] 4.86 56.8
BS:157 [ARG] B5:4609 [G] 3.03 base:SC, base:SC 56.8
BS:158 [VAL] B5:1994 [G] 3.28 10.4
BS:160 [ARG] B5:1860 [C] 3.47 50.0
BS:160 [ARG] B5:1861 [G] 2.79 B5:2001 [C] 50.0
BS:160 [ARG] B5:1994 [G] 3.38 sugar:SC 50.0
BS:160 [ARG] B5:1995 [G] 3.87 B5:1866 [U] 50.0
BS:161 [ARG] B5:1860 [C] 3.31 base/AA stacks 37.5
BS:161 [ARG] B5:4615 [A] 4.29 37.5
BS:162 [GLN] B5:1994 [G] 4.72 6.6
BS:163 [HIS] B5:1858 [G] 2.62 base:BB 6.5
BS:163 [HIS] B5:1859 [C] 3.87 B5:2002 [G] 6.5
BS:164 [LYS] B5:1858 [G] 4.82 43.4
BS:165 [PRO] B5:1858 [G] 4.82 46.8
BS:165 [PRO] B5:4614 [G] 4.7 46.8
BS:165 [PRO] B5:4615 [A] 3.1 46.8
BS:166 [ARG] B5:1858 [G] 3.0 sugar:SC base/AA stacks 54.7
BS:167 [PHE] B5:4614 [G] 4.29 73.1
BS:168 [SER] B5:4614 [G] 3.66 5.9
BS:168 [SER] B5:4615 [A] 4.51 5.9
BS:169 [ALA] B5:4614 [G] 3.06 sugar:BB 65.0
BS:170 [LYS] B5:4610 [C] 3.79 22.6
BS:170 [LYS] B5:4613 [A] 2.59 sugar:SC 22.6
BS:170 [LYS] B5:4614 [G] 3.6 22.6
BS:170 [LYS] B5:4615 [A] 4.72 22.6
BS:171 [ARG] B5:4508 [G] 4.24 74.2
BS:171 [ARG] B5:4509 [A] 3.49 74.2
BS:171 [ARG] B5:4510 [U] 3.96 74.2
BS:171 [ARG] B5:4610 [C] 2.5 base:BB 74.2
BS:172 [PRO] B5:4509 [A] 3.37 78.0
BS:172 [PRO] B5:4510 [U] 3.02 base:BB 78.0
BS:172 [PRO] B5:4610 [C] 3.56 78.0
BS:173 [ASN] B5:4509 [A] 4.21 50.0
BS:173 [ASN] B5:4510 [U] 3.37 50.0
BS:173 [ASN] B5:4512 [G] 3.25 50.0
BS:173 [ASN] B5:4610 [C] 3.69 50.0
BS:174 [THR] B5:4510 [U] 2.29 base:BB, sugar:SC 72.6
BS:174 [THR] B5:4511 [A] 3.03 72.6
BS:175 [PHE] B5:4510 [U] 4.88 0.8
BS:175 [PHE] B5:4511 [A] 3.94 0.8
BS:175 [PHE] B5:4512 [G] 3.32 base/AA stacks 0.8
BS:176 [PHE] B5:4609 [G] 3.31 base/AA stacks 8.3

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group42 7O7Y_BS_B5 BS: Ribosomal protein el20, Oryctolagus cuniculus (natural) B5: 28s rRNA, Oryctolagus cuniculus (natural) RplX-like Eukaryotic large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 2

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
6AZ3_R_1 7O7Y_BS_B5 0.44 0.92 2.42 0.2 RplX-like Eukaryotic large subunit ribosomal RNA compare
4V9F_6_0 7O7Y_BS_B5 0.61 0.93 2.87 0.12 RplX-like compare