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All interfaces > All interologs > Interface groups > group43 > 4Y4O_11_1A

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Licorice
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RNA

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Licorice
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Chain
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Hydrophobicity
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Conservation*

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Rim - Core

Contacts -

4Y4O_11
4Y4O_1A
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
11:2 [SER] 1A:1409 [C] 4.53 1A:1414 [G] 78.71
11:2 [SER] 1A:1410 [G] 2.59 1A:1413 [A] 78.71
11:2 [SER] 1A:1411 [A] 2.81 78.71
11:3 [LYS] 1A:1410 [G] 3.03 1A:1413 [A] 63.76
11:3 [LYS] 1A:1411 [A] 3.19 63.76
11:3 [LYS] 1A:1412 [A] 2.98 63.76
11:10 [LYS] 1A:400 [U] 4.84 1A:428 [A] 88.3
11:10 [LYS] 1A:423 [G] 3.81 1A:405 [C] 88.3
11:10 [LYS] 1A:424 [G] 2.68 1A:404 [C] 88.3
11:11 [ARG] 1A:423 [G] 3.87 1A:405 [C] 43.14
11:11 [ARG] 1A:1411 [A] 2.88 sugar:SC 43.14
11:11 [ARG] 1A:1412 [A] 4.26 43.14
11:12 [PRO] 1A:177 [G] 4.41 1A:197 [C] 58.25
11:12 [PRO] 1A:1411 [A] 3.68 58.25
11:13 [ILE] 1A:177 [G] 4.61 1A:197 [C] 6.14
11:13 [ILE] 1A:406 [G] 3.83 1A:422 [U] 6.14
11:13 [ILE] 1A:422 [U] 4.77 1A:406 [G] 6.14
11:13 [ILE] 1A:423 [G] 3.22 1A:405 [C] 6.14
11:14 [VAL] 1A:177 [G] 4.06 1A:197 [C] 28.97
11:14 [VAL] 1A:178 [G] 3.63 1A:196 [A] 28.97
11:14 [VAL] 1A:407 [U] 4.46 1A:421 [A] 28.97
11:15 [ALA] 1A:406 [G] 4.98 1A:422 [U] 88.24
11:15 [ALA] 1A:407 [U] 3.3 1A:421 [A] 88.24
11:16 [ASN] 1A:406 [G] 4.89 1A:422 [U] 68.86
11:16 [ASN] 1A:407 [U] 3.01 1A:421 [A] sugar:BB 68.86
11:16 [ASN] 1A:408 [G] 2.8 1A:420 [C] 68.86
11:17 [SER] 1A:407 [U] 4.54 1A:421 [A] 59.63
11:17 [SER] 1A:2103 [C] 4.11 1A:2251 [G] 59.63
11:18 [ILE] 1A:407 [U] 3.55 1A:421 [A] 71.17
11:18 [ILE] 1A:408 [G] 3.82 1A:420 [C] 71.17
11:19 [GLN] 1A:2102 [G] 3.59 1A:2252 [C] 76.67
11:19 [GLN] 1A:2103 [C] 3.18 1A:2251 [G] 76.67
11:20 [ARG] 1A:407 [U] 4.94 1A:421 [A] 81.84
11:20 [ARG] 1A:413 [G] 4.94 81.84
11:20 [ARG] 1A:414 [U] 2.72 81.84
11:21 [ARG] 1A:2100 [C] 4.56 1A:2254 [G] 82.02
11:21 [ARG] 1A:2101 [U] 2.44 1A:2253 [A] 82.02
11:21 [ARG] 1A:2102 [G] 3.38 1A:2252 [C] 82.02
11:21 [ARG] 1A:2444 [A] 4.09 82.02
11:21 [ARG] 1A:2445 [A] 4.65 82.02
11:23 [LYS] 1A:415 [G] 4.99 63.81
11:24 [ALA] 1A:415 [G] 3.38 63.45
11:25 [LYS] 1A:415 [G] 2.89 84.68
11:25 [LYS] 1A:416 [G] 4.47 84.68
11:25 [LYS] 1A:2407 [C] 3.39 1A:2433 [G] 84.68
11:25 [LYS] 1A:2408 [G] 2.49 1A:2432 [C] 84.68
11:25 [LYS] 1A:2409 [G] 4.41 1A:2431 [U] 84.68
11:26 [ARG] 1A:415 [G] 4.68 71.57
11:26 [ARG] 1A:416 [G] 3.97 71.57
11:26 [ARG] 1A:417 [A] 4.79 71.57
11:26 [ARG] 1A:1903 [C] 4.8 1A:1892 [G] 71.57
11:26 [ARG] 1A:1904 [C] 4.0 1A:1891 [G] 71.57
11:28 [GLY] 1A:2408 [G] 2.87 1A:2432 [C] sugar:BB 93.71
11:28 [GLY] 1A:2409 [G] 3.46 1A:2431 [U] 93.71
11:29 [GLY] 1A:2408 [G] 3.33 1A:2432 [C] 97.84
11:30 [VAL] 1A:2407 [C] 2.66 1A:2433 [G] sugar:BB 83.02
11:30 [VAL] 1A:2408 [G] 3.73 1A:2432 [C] 83.02
11:30 [VAL] 1A:2433 [G] 4.05 1A:2407 [C] 83.02
11:31 [GLY] 1A:415 [G] 3.59 97.84
11:31 [GLY] 1A:2407 [C] 4.8 1A:2433 [G] 97.84
11:32 [LYS] 1A:414 [U] 3.67 31.19
11:32 [LYS] 1A:415 [G] 2.75 31.19
11:33 [LYS] 1A:237 [G] 3.49 1A:187 [C] sugar:SC 73.36
11:33 [LYS] 1A:2444 [A] 3.44 73.36
11:34 [THR] 1A:189 [U] 3.44 1A:239 [G] 56.33
11:34 [THR] 1A:414 [U] 3.97 56.33
11:34 [THR] 1A:2444 [A] 2.88 base:BB 56.33
11:34 [THR] 1A:2445 [A] 4.66 56.33
11:35 [THR] 1A:2101 [U] 2.5 1A:2253 [A] sugar:BB 87.5
11:35 [THR] 1A:2102 [G] 2.91 1A:2252 [C] 87.5
11:35 [THR] 1A:2444 [A] 3.96 87.5
11:35 [THR] 1A:2445 [A] 3.84 87.5
11:36 [GLY] 1A:189 [U] 4.79 1A:239 [G] 74.62
11:36 [GLY] 1A:2101 [U] 4.97 1A:2253 [A] 74.62
11:36 [GLY] 1A:2102 [G] 4.8 1A:2252 [C] 74.62
11:37 [ILE] 1A:189 [U] 4.0 1A:239 [G] 56.3
11:37 [ILE] 1A:190 [C] 3.31 1A:183 [G] 56.3
11:37 [ILE] 1A:408 [G] 4.99 1A:420 [C] 56.3
11:38 [SER] 1A:2102 [G] 4.94 1A:2252 [C] 78.8
11:38 [SER] 1A:2103 [C] 3.58 1A:2251 [G] 78.8
11:39 [LYS] 1A:178 [G] 3.02 1A:196 [A] 69.91
11:39 [LYS] 1A:179 [A] 3.03 1A:195 [U] 69.91
11:39 [LYS] 1A:194 [G] 2.62 base:SC 69.91
11:40 [ARG] 1A:406 [G] 3.77 1A:422 [U] 94.69
11:40 [ARG] 1A:2243 [C] 3.9 1A:2110 [G] 94.69
11:40 [ARG] 1A:2244 [U] 2.79 1A:2109 [G] 94.69
11:41 [ARG] 1A:1410 [G] 4.42 1A:1413 [A] 52.31
11:41 [ARG] 1A:1411 [A] 2.7 sugar:SC 52.31
11:41 [ARG] 1A:2243 [C] 3.47 1A:2110 [G] 52.31
11:42 [GLN] 1A:406 [G] 2.56 1A:422 [U] base:SC, base:SC 60.44
11:42 [GLN] 1A:423 [G] 3.67 1A:405 [C] base/AA stacks 60.44
11:42 [GLN] 1A:2242 [G] 4.71 1A:2111 [U] 60.44
11:42 [GLN] 1A:2243 [C] 3.22 1A:2110 [G] 60.44
11:42 [GLN] 1A:2244 [U] 2.96 1A:2109 [G] 60.44
11:43 [TYR] 1A:423 [G] 2.83 1A:405 [C] 9.03
11:43 [TYR] 1A:424 [G] 3.9 1A:404 [C] 9.03
11:43 [TYR] 1A:1411 [A] 3.39 9.03
11:43 [TYR] 1A:1839 [U] 4.4 9.03
11:43 [TYR] 1A:2242 [G] 2.69 1A:2111 [U] sugar:BB 9.03
11:43 [TYR] 1A:2243 [C] 2.8 1A:2110 [G] 9.03
11:44 [PRO] 1A:423 [G] 3.2 1A:405 [C] 81.91
11:44 [PRO] 1A:424 [G] 3.25 1A:404 [C] 81.91
11:44 [PRO] 1A:2242 [G] 3.65 1A:2111 [U] 81.91
11:45 [ASN] 1A:423 [G] 4.18 1A:405 [C] 99.0
11:45 [ASN] 1A:424 [G] 2.83 1A:404 [C] 99.0
11:45 [ASN] 1A:425 [G] 2.92 1A:403 [C] 99.0
11:45 [ASN] 1A:2112 [G] 2.87 1A:2241 [C] base:SC, base:SC 99.0
11:45 [ASN] 1A:2113 [U] 4.69 1A:2240 [G] 99.0
11:45 [ASN] 1A:2241 [C] 4.44 1A:2112 [G] 99.0
11:45 [ASN] 1A:2242 [G] 3.18 1A:2111 [U] base/AA stacks 99.0
11:46 [LEU] 1A:2241 [C] 4.75 1A:2112 [G] 82.14
11:46 [LEU] 1A:2242 [G] 4.78 1A:2111 [U] 82.14
11:47 [GLN] 1A:2112 [G] 3.26 1A:2241 [C] 83.57
11:47 [GLN] 1A:2113 [U] 3.21 1A:2240 [G] 83.57
11:47 [GLN] 1A:2240 [G] 2.94 1A:2113 [U] base:SC 83.57
11:47 [GLN] 1A:2241 [C] 3.16 1A:2112 [G] base:SC 83.57
11:48 [LYS] 1A:2221 [A] 4.89 1A:2236 [G] 57.74
11:48 [LYS] 1A:2222 [C] 4.05 1A:2235 [G] 57.74
11:48 [LYS] 1A:2223 [C] 2.8 1A:2234 [G] 57.74
11:50 [ARG] 1A:2221 [A] 3.14 1A:2236 [G] 69.24
11:50 [ARG] 1A:2222 [C] 2.88 1A:2235 [G] 69.24
11:52 [ARG] 1A:2230 [U] 2.57 base/AA stacks 0.0
11:55 [GLY] 1A:2230 [U] 3.21 base:BB 81.6
11:61 [ARG] 1A:1409 [C] 3.83 1A:1414 [G] 43.98
11:61 [ARG] 1A:1410 [G] 3.03 1A:1413 [A] 43.98
11:63 [ALA] 1A:424 [G] 4.02 1A:404 [C] 83.68
11:64 [ALA] 1A:425 [G] 3.79 1A:403 [C] 79.47
11:64 [ALA] 1A:2112 [G] 3.61 1A:2241 [C] 79.47
11:64 [ALA] 1A:2113 [U] 4.5 1A:2240 [G] 79.47
11:65 [SER] 1A:399 [G] 3.03 51.82
11:65 [SER] 1A:425 [G] 4.27 1A:403 [C] 51.82
11:66 [HIS] 1A:399 [G] 3.33 79.84
11:66 [HIS] 1A:400 [U] 3.98 1A:428 [A] 79.84
11:67 [ILE] 1A:2113 [U] 4.05 1A:2240 [G] 69.5
11:68 [PRO] 1A:399 [G] 3.88 76.7
11:69 [LYS] 1A:399 [G] 3.02 64.61
11:75 [GLU] 1A:277 [G] 4.44 1A:267 [C] 45.02
11:76 [ARG] 1A:277 [G] 2.67 1A:267 [C] sugar:BB 2.42
11:76 [ARG] 1A:278 [G] 3.09 1A:266 [C] 2.42
11:77 [ALA] 1A:277 [G] 4.49 1A:267 [C] 13.0
11:78 [LYS] 1A:268 [G] 3.77 1A:276 [C] 30.62
11:78 [LYS] 1A:269 [G] 3.48 1A:275 [C] 30.62
11:78 [LYS] 1A:277 [G] 4.05 1A:267 [C] 30.62
11:79 [GLY] 1A:267 [C] 4.91 1A:277 [G] 12.59
11:79 [GLY] 1A:268 [G] 4.0 1A:276 [C] 12.59
11:79 [GLY] 1A:277 [G] 3.1 1A:267 [C] base:BB, sugar:BB 12.59
11:79 [GLY] 1A:278 [G] 3.72 1A:266 [C] 12.59
11:80 [LEU] 1A:278 [G] 3.38 1A:266 [C] 8.07
11:81 [LYS] 1A:267 [C] 3.21 1A:277 [G] 11.38
11:81 [LYS] 1A:268 [G] 3.81 1A:276 [C] 11.38
11:92 [LYS] 1A:152 [G] 3.3 1A:163 [C] 49.28
11:92 [LYS] 1A:153 [C] 2.72 1A:162 [G] 49.28
11:97 [LEU] 1A:278 [G] 3.63 1A:266 [C] 68.4
11:97 [LEU] 1A:279 [G] 4.37 1A:265 [U] 68.4

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*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group43 4Y4O_11_1A 11: 50s ribosomal protein l28, Thermus thermophilus (strain hb8 / atcc 27634 / dsm 579) (natural) 1A: 23s ribosomal RNA, Thermus thermophilus hb8 (natural) P60494 Ribosomal protein L28 Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 2

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_11_1A 7RYG_W_A 0.74 0.96 2.57 0.35 Ribosomal protein L28 Bacterial large subunit ribosomal RNA compare
4Y4O_11_1A 7K00_w_a 0.72 0.96 1.92 0.33 Ribosomal protein L28 Bacterial large subunit ribosomal RNA compare