RNAprotDB

All interfaces > All interologs > Interface groups > group44 > 4Y4O_1I_1A

Interface analysis

mouse controls

Style

Protein

Cartoon
Licorice
Surface

RNA

Cartoon
Licorice
Surface

Color

Chain
Chain (with hetatm)
Chainbow
Hydrophobicity
Electrostatics (surface only)
Conservation*

View

Focus on

Interface
RNA
Protein
All

Show chains

Interface

show as licorice
show Accessibility
Rim - Core

Contacts -

4Y4O_1I
4Y4O_1A
Distance
Base Pair
Hbond nuc:res
Base Stacking
Residue conservation
1I:6 [LEU] 1A:271 [U] 4.84 36.28
1I:22 [LYS] 1A:2115 [G] 3.59 1A:2218 [C] 67.97
1I:22 [LYS] 1A:2116 [G] 3.02 1A:2217 [C] 67.97
1I:23 [PRO] 1A:2113 [U] 4.94 1A:2240 [G] 65.21
1I:23 [PRO] 1A:2115 [G] 3.43 1A:2218 [C] 65.21
1I:24 [GLY] 1A:2114 [U] 3.78 1A:2239 [A] 98.95
1I:24 [GLY] 1A:2115 [G] 2.94 1A:2218 [C] 98.95
1I:24 [GLY] 1A:2220 [A] 4.19 98.95
1I:25 [TYR] 1A:2115 [G] 3.45 1A:2218 [C] 87.53
1I:25 [TYR] 1A:2116 [G] 3.8 1A:2217 [C] 87.53
1I:25 [TYR] 1A:2220 [A] 3.92 87.53
1I:27 [ARG] 1A:2113 [U] 4.47 1A:2240 [G] 89.68
1I:27 [ARG] 1A:2114 [U] 4.55 1A:2239 [A] 89.68
1I:28 [ASN] 1A:2114 [U] 3.28 1A:2239 [A] 99.0
1I:28 [ASN] 1A:2220 [A] 3.41 99.0
1I:28 [ASN] 1A:2221 [A] 3.25 1A:2236 [G] 99.0
1I:28 [ASN] 1A:2237 [A] 4.6 1A:2219 [U] 99.0
1I:29 [TYR] 1A:2220 [A] 3.46 base/AA stacks 75.1
1I:33 [ARG] 1A:2219 [U] 3.77 1A:2237 [A] 68.13
1I:33 [ARG] 1A:2220 [A] 2.65 68.13
1I:37 [VAL] 1A:271 [U] 4.86 63.67
1I:42 [SER] 1A:276 [C] 3.12 1A:268 [G] 27.95
1I:42 [SER] 1A:277 [G] 3.5 1A:267 [C] 27.95
1I:43 [ASN] 1A:271 [U] 4.68 68.79
1I:45 [LYS] 1A:275 [C] 4.63 1A:269 [G] 57.55
1I:45 [LYS] 1A:276 [C] 3.25 1A:268 [G] 57.55
1I:46 [ALA] 1A:275 [C] 3.58 1A:269 [G] 36.34
1I:46 [ALA] 1A:276 [C] 4.28 1A:268 [G] 36.34
1I:49 [ALA] 1A:275 [C] 3.91 1A:269 [G] 35.45
1I:50 [ARG] 1A:271 [U] 2.75 26.28
1I:50 [ARG] 1A:272 [U] 2.52 26.28
1I:50 [ARG] 1A:273 [G] 3.2 1A:270 [C] 26.28
1I:52 [ARG] 1A:274 [U] 3.98 0.0
1I:53 [ALA] 1A:273 [G] 3.64 1A:270 [C] 0.0

logo_download Export the table of contacts

*Conservation was calculated using Rate4Site
NB: conservation is missing (completly white) for a very small minority of cases in which no homologous sequences were found (e.g. synthetic proteins 7D3J_A & 7EU9_A)

Properties of this interface

Interolog group ID Structure ID Structure description
 UniProt ID
 		ECOD label(s)
 		RFAM label(s)
 		Is ribosome? RCSB PDB link
group44 4Y4O_1I_1A 1I: 50s ribosomal protein l9, Thermus thermophilus (strain hb8 / atcc 27634 / dsm 579) (natural) 1A: 23s ribosomal RNA, Thermus thermophilus hb8 (natural) Q5SLQ1 L9 N-domain-like Bacterial large subunit ribosomal RNA ✔

Interologs

Total number of interologs for this interface: 2

Interface 1 Interface 2 Percentage conservation
 		Interface TM-score
 		Interface RMSD
 		Percentage identity
 		Common ECOD label(s)
 		Common RFAM label(s)
 		Explore both interfaces
4Y4O_1I_1A 7RYG_H_A 0.97 0.96 3.59 0.5 L9 N-domain-like Bacterial large subunit ribosomal RNA compare
4Y4O_1I_1A 7K00_h_a 0.88 0.96 2.81 0.56 L9 N-domain-like Bacterial large subunit ribosomal RNA compare